Results 81 - 100 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 33966 | 0.66 | 0.929866 |
Target: 5'- gAGCGCGCUGG-CGccg--GGCGCGCu -3' miRNA: 3'- gUCGUGCGACUaGCaacagUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 33813 | 0.66 | 0.924379 |
Target: 5'- cCGGCGCGCUGGagCGgc-UguGCGCAg -3' miRNA: 3'- -GUCGUGCGACUa-GCaacAguCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 33317 | 0.67 | 0.899887 |
Target: 5'- gCAGCcUGUUGuUCGUgg-CGGCGCGCu -3' miRNA: 3'- -GUCGuGCGACuAGCAacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 31206 | 0.68 | 0.847688 |
Target: 5'- -uGCucuCGCUGAgggcgCGgcGUgGGCGCGCg -3' miRNA: 3'- guCGu--GCGACUa----GCaaCAgUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 31001 | 0.67 | 0.893138 |
Target: 5'- gCGGCACcaUGuccggCGUUGcCGGCGCGCg -3' miRNA: 3'- -GUCGUGcgACua---GCAACaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 30740 | 0.67 | 0.893138 |
Target: 5'- -cGCGCGCUGGccCGag--CGGCGCGCu -3' miRNA: 3'- guCGUGCGACUa-GCaacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 30510 | 0.69 | 0.839342 |
Target: 5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3' miRNA: 3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 30247 | 0.7 | 0.766064 |
Target: 5'- -cGCGuguCGCUGGcggCGUUG-CAGCGCGCc -3' miRNA: 3'- guCGU---GCGACUa--GCAACaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 29689 | 0.69 | 0.811325 |
Target: 5'- gCAGCugaugGCGCUGAUCGcUUGggcgcgagacugCGGCGCGg -3' miRNA: 3'- -GUCG-----UGCGACUAGC-AACa-----------GUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 29339 | 0.66 | 0.924379 |
Target: 5'- gAGCGCGCg---CGgcucCAGCGCGCg -3' miRNA: 3'- gUCGUGCGacuaGCaacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 27985 | 0.7 | 0.766064 |
Target: 5'- uGGCgccGCGCUGGgccgCGcUG-CAGCGCGCg -3' miRNA: 3'- gUCG---UGCGACUa---GCaACaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 26758 | 0.68 | 0.855825 |
Target: 5'- gAGCGCgGgUGcgCGgccugGUCAGUGCGCg -3' miRNA: 3'- gUCGUG-CgACuaGCaa---CAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 23802 | 0.68 | 0.876695 |
Target: 5'- cCAGCGCGgcggccaccgaccaCUGcUCGcgGUcCAGCGCGCg -3' miRNA: 3'- -GUCGUGC--------------GACuAGCaaCA-GUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 22124 | 0.66 | 0.929866 |
Target: 5'- gGGCGCGCccUGGgcccggCGgcGgcggCGGCGCGCa -3' miRNA: 3'- gUCGUGCG--ACUa-----GCaaCa---GUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 19628 | 0.66 | 0.944799 |
Target: 5'- cCGGgGCGC----CGgcGUCGGCGCGCg -3' miRNA: 3'- -GUCgUGCGacuaGCaaCAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 18816 | 0.67 | 0.899887 |
Target: 5'- cCAGCGCGCgcaUGGgcaCGgcGUCcucGCGCGCg -3' miRNA: 3'- -GUCGUGCG---ACUa--GCaaCAGu--CGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 18600 | 0.76 | 0.420998 |
Target: 5'- uUAGCGCGCcGuccgCGgcGUCGGCGCGCg -3' miRNA: 3'- -GUCGUGCGaCua--GCaaCAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 18214 | 0.66 | 0.935098 |
Target: 5'- gGGCugGCgGucucUCGgcgGUCGuGCGCGCg -3' miRNA: 3'- gUCGugCGaCu---AGCaa-CAGU-CGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 17681 | 0.71 | 0.726063 |
Target: 5'- aGGCGCGCaccgccagUGG-CGUUGUCGGC-CACg -3' miRNA: 3'- gUCGUGCG--------ACUaGCAACAGUCGcGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 15449 | 0.72 | 0.631968 |
Target: 5'- uGGCGCuGCUGAaaagCGUgg-CGGCGCACg -3' miRNA: 3'- gUCGUG-CGACUa---GCAacaGUCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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