Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 18600 | 0.76 | 0.420998 |
Target: 5'- uUAGCGCGCcGuccgCGgcGUCGGCGCGCg -3' miRNA: 3'- -GUCGUGCGaCua--GCaaCAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 70284 | 0.69 | 0.830795 |
Target: 5'- -cGCGCGcCUGG-CGggGUCgcGGCGCGCc -3' miRNA: 3'- guCGUGC-GACUaGCaaCAG--UCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 133323 | 0.69 | 0.839342 |
Target: 5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3' miRNA: 3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 19628 | 0.66 | 0.944799 |
Target: 5'- cCGGgGCGC----CGgcGUCGGCGCGCg -3' miRNA: 3'- -GUCgUGCGacuaGCaaCAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 104402 | 0.71 | 0.695118 |
Target: 5'- cCAGCGCGCcGcUCGg-GcCAGCGCGCg -3' miRNA: 3'- -GUCGUGCGaCuAGCaaCaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 46502 | 0.71 | 0.705503 |
Target: 5'- aCAGCACGCUGAgcaGgc-UCucGCGCACg -3' miRNA: 3'- -GUCGUGCGACUag-CaacAGu-CGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 77617 | 0.7 | 0.756229 |
Target: 5'- gCGGCGcCGCUGggCGagGaCGGCGCGCc -3' miRNA: 3'- -GUCGU-GCGACuaGCaaCaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 27985 | 0.7 | 0.766064 |
Target: 5'- uGGCgccGCGCUGGgccgCGcUG-CAGCGCGCg -3' miRNA: 3'- gUCG---UGCGACUa---GCaACaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 63167 | 0.7 | 0.775771 |
Target: 5'- aGGCGCGCacgucGGUCGcgGUC-GCGCGCc -3' miRNA: 3'- gUCGUGCGa----CUAGCaaCAGuCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 77851 | 0.69 | 0.830795 |
Target: 5'- cCAGCGCGCUGGgggcgcucUCGgcccgggaguuuUUGaaCAGCGCGCu -3' miRNA: 3'- -GUCGUGCGACU--------AGC------------AACa-GUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 66256 | 0.7 | 0.789129 |
Target: 5'- uCGGCAUGCUGGgccggggaggccucuUCGgcc-CGGCGCACg -3' miRNA: 3'- -GUCGUGCGACU---------------AGCaacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 59878 | 0.7 | 0.766064 |
Target: 5'- cCGGCGCGCggccuccgCGUUGgcgaggagggCGGCGCGCg -3' miRNA: 3'- -GUCGUGCGacua----GCAACa---------GUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 70996 | 0.75 | 0.487422 |
Target: 5'- aCGGCGCGCUGAcggagguuUCGU--UCGGCGCGg -3' miRNA: 3'- -GUCGUGCGACU--------AGCAacAGUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 29689 | 0.69 | 0.811325 |
Target: 5'- gCAGCugaugGCGCUGAUCGcUUGggcgcgagacugCGGCGCGg -3' miRNA: 3'- -GUCG-----UGCGACUAGC-AACa-----------GUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 74751 | 0.74 | 0.517376 |
Target: 5'- cCGGCugGgaGA-CGcgGUCGGCGCGCg -3' miRNA: 3'- -GUCGugCgaCUaGCaaCAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 30247 | 0.7 | 0.766064 |
Target: 5'- -cGCGuguCGCUGGcggCGUUG-CAGCGCGCc -3' miRNA: 3'- guCGU---GCGACUa--GCAACaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 98549 | 0.69 | 0.822055 |
Target: 5'- uGGCACGCUGGUCuucuagcgcUGUUA-CGCACg -3' miRNA: 3'- gUCGUGCGACUAGca-------ACAGUcGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 74350 | 0.69 | 0.839342 |
Target: 5'- -cGCGCGCUGGUggcgcgCGUgg-UGGCGCGCg -3' miRNA: 3'- guCGUGCGACUA------GCAacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 15449 | 0.72 | 0.631968 |
Target: 5'- uGGCGCuGCUGAaaagCGUgg-CGGCGCACg -3' miRNA: 3'- gUCGUG-CGACUa---GCAacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 17681 | 0.71 | 0.726063 |
Target: 5'- aGGCGCGCaccgccagUGG-CGUUGUCGGC-CACg -3' miRNA: 3'- gUCGUGCG--------ACUaGCAACAGUCGcGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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