miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 23802 0.68 0.876695
Target:  5'- cCAGCGCGgcggccaccgaccaCUGcUCGcgGUcCAGCGCGCg -3'
miRNA:   3'- -GUCGUGC--------------GACuAGCaaCA-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77713 0.7 0.775771
Target:  5'- -cGCGCGCUGGUgCGcgcUUGGCGCGCg -3'
miRNA:   3'- guCGUGCGACUA-GCaacAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 12811 0.66 0.924379
Target:  5'- uCAGCGCGUgGcgCGcgagCGGCGCGCu -3'
miRNA:   3'- -GUCGUGCGaCuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 63167 0.7 0.775771
Target:  5'- aGGCGCGCacgucGGUCGcgGUC-GCGCGCc -3'
miRNA:   3'- gUCGUGCGa----CUAGCaaCAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 29689 0.69 0.811325
Target:  5'- gCAGCugaugGCGCUGAUCGcUUGggcgcgagacugCGGCGCGg -3'
miRNA:   3'- -GUCG-----UGCGACUAGC-AACa-----------GUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 70284 0.69 0.830795
Target:  5'- -cGCGCGcCUGG-CGggGUCgcGGCGCGCc -3'
miRNA:   3'- guCGUGC-GACUaGCaaCAG--UCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 34766 0.66 0.940075
Target:  5'- uGGCGCgGCUGcgCGccgcGgccgCGGCGCGCg -3'
miRNA:   3'- gUCGUG-CGACuaGCaa--Ca---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 18214 0.66 0.935098
Target:  5'- gGGCugGCgGucucUCGgcgGUCGuGCGCGCg -3'
miRNA:   3'- gUCGugCGaCu---AGCaa-CAGU-CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 33966 0.66 0.929866
Target:  5'- gAGCGCGCUGG-CGccg--GGCGCGCu -3'
miRNA:   3'- gUCGUGCGACUaGCaacagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 81864 0.66 0.944799
Target:  5'- gAGCGCGCguucGUCGgacUCGGcCGCGCg -3'
miRNA:   3'- gUCGUGCGac--UAGCaacAGUC-GCGUG- -5'
6388 5' -53.9 NC_001847.1 + 69023 0.66 0.918636
Target:  5'- gAGC-UGCUGcggugcGUCGcgcUGUCGGCGUACg -3'
miRNA:   3'- gUCGuGCGAC------UAGCa--ACAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 37926 0.67 0.906388
Target:  5'- aCGGCGCaGCUGGagcaGcUGUCGGCGCu- -3'
miRNA:   3'- -GUCGUG-CGACUag--CaACAGUCGCGug -5'
6388 5' -53.9 NC_001847.1 + 31001 0.67 0.893138
Target:  5'- gCGGCACcaUGuccggCGUUGcCGGCGCGCg -3'
miRNA:   3'- -GUCGUGcgACua---GCAACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 80149 0.67 0.886144
Target:  5'- cCAGCgccgccaugACGCUGugguacgCGUUG-CAGUGCGCc -3'
miRNA:   3'- -GUCG---------UGCGACua-----GCAACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 41274 0.68 0.863745
Target:  5'- cCGGCGCGC-GGUCag---CAGCGCGCc -3'
miRNA:   3'- -GUCGUGCGaCUAGcaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 26758 0.68 0.855825
Target:  5'- gAGCGCgGgUGcgCGgccugGUCAGUGCGCg -3'
miRNA:   3'- gUCGUG-CgACuaGCaa---CAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 19628 0.66 0.944799
Target:  5'- cCGGgGCGC----CGgcGUCGGCGCGCg -3'
miRNA:   3'- -GUCgUGCGacuaGCaaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 14450 0.66 0.940075
Target:  5'- gAGCGCGCggccgCGcUGcUCGGCGUGCg -3'
miRNA:   3'- gUCGUGCGacua-GCaAC-AGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 30510 0.69 0.839342
Target:  5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3'
miRNA:   3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 97009 0.67 0.912639
Target:  5'- uCGGCgGCGCUGGccgCGggGggCAGCGCGu -3'
miRNA:   3'- -GUCG-UGCGACUa--GCaaCa-GUCGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.