miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 72052 0.68 0.847688
Target:  5'- -cGCACGCg---CGgcgGUUGGCGCGCa -3'
miRNA:   3'- guCGUGCGacuaGCaa-CAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 69497 0.68 0.855825
Target:  5'- gGGCGCGCacgcGGcCGUUGgCGGCGCAg -3'
miRNA:   3'- gUCGUGCGa---CUaGCAACaGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 54158 0.66 0.940075
Target:  5'- gCAGCGCGUccuccgCGUcGUCAaacGCGCGCa -3'
miRNA:   3'- -GUCGUGCGacua--GCAaCAGU---CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 3803 0.66 0.944799
Target:  5'- -cGCACGCggccGggCGgcGgCGGCGCGCu -3'
miRNA:   3'- guCGUGCGa---CuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 57305 0.66 0.944799
Target:  5'- cCAGCGCGCUGGc------CAGUGCGCg -3'
miRNA:   3'- -GUCGUGCGACUagcaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 29339 0.66 0.924379
Target:  5'- gAGCGCGCg---CGgcucCAGCGCGCg -3'
miRNA:   3'- gUCGUGCGacuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 90227 0.67 0.912639
Target:  5'- aCAGCACGCg---CGc-GUC-GCGCACg -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 97009 0.67 0.912639
Target:  5'- uCGGCgGCGCUGGccgCGggGggCAGCGCGu -3'
miRNA:   3'- -GUCG-UGCGACUa--GCaaCa-GUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 71881 0.68 0.860604
Target:  5'- gAGCGCGCggcccGUUGUUGUCuuucccagcccguGCGCGCc -3'
miRNA:   3'- gUCGUGCGac---UAGCAACAGu------------CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 101176 0.68 0.855825
Target:  5'- cCAGCGCGCc---CGgcGcCAGCGCGCu -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 101551 0.68 0.871443
Target:  5'- cCAGCugGCgcagGA-CGUcGUCGGCaccGCGCa -3'
miRNA:   3'- -GUCGugCGa---CUaGCAaCAGUCG---CGUG- -5'
6388 5' -53.9 NC_001847.1 + 103760 0.68 0.871443
Target:  5'- -cGCGCGCUGGgacUUGggUGcUCAGgGCGCg -3'
miRNA:   3'- guCGUGCGACU---AGCa-AC-AGUCgCGUG- -5'
6388 5' -53.9 NC_001847.1 + 37682 0.68 0.878911
Target:  5'- uUAGCGCGCggcccugGcgCGgcugCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGa------CuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 97751 1.09 0.003661
Target:  5'- cCAGCACGCUGAUCGUUGUCAGCGCACc -3'
miRNA:   3'- -GUCGUGCGACUAGCAACAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 122349 0.8 0.251933
Target:  5'- --aCGCGCUGAUCGUUGggCGGCGUGCg -3'
miRNA:   3'- gucGUGCGACUAGCAACa-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 70260 0.76 0.458312
Target:  5'- gGGCGCGCgg--CGUUGcucUCGGCGCGCg -3'
miRNA:   3'- gUCGUGCGacuaGCAAC---AGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 100501 0.72 0.642546
Target:  5'- uCGGCGCGCcGcUCGgccUCGGCGCGCa -3'
miRNA:   3'- -GUCGUGCGaCuAGCaacAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 53437 0.71 0.684677
Target:  5'- uCGGCGCGCg---CGUgccgCAGCGCGCg -3'
miRNA:   3'- -GUCGUGCGacuaGCAaca-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35623 0.71 0.684677
Target:  5'- aAGCGCGCgGcgCGggGcUCGGCGCAa -3'
miRNA:   3'- gUCGUGCGaCuaGCaaC-AGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 12393 0.68 0.863745
Target:  5'- gGGCGCGUgUGGUCGgUGaCcGCGCGCa -3'
miRNA:   3'- gUCGUGCG-ACUAGCaACaGuCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.