miRNA display CGI


Results 81 - 100 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 69497 0.68 0.855825
Target:  5'- gGGCGCGCacgcGGcCGUUGgCGGCGCAg -3'
miRNA:   3'- gUCGUGCGa---CUaGCAACaGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 101176 0.68 0.855825
Target:  5'- cCAGCGCGCc---CGgcGcCAGCGCGCu -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 94603 0.71 0.736218
Target:  5'- gCGGCGCGCUGccgcagcacGUCGcgcGUC-GCGCGCa -3'
miRNA:   3'- -GUCGUGCGAC---------UAGCaa-CAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 98724 0.71 0.695118
Target:  5'- aCGGCGCGC--GUCGcaggGUCuGCGCGCg -3'
miRNA:   3'- -GUCGUGCGacUAGCaa--CAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 1589 0.71 0.695118
Target:  5'- cCAGCGCGCcGcUCGg-GcCAGCGCGCg -3'
miRNA:   3'- -GUCGUGCGaCuAGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35623 0.71 0.684677
Target:  5'- aAGCGCGCgGcgCGggGcUCGGCGCAa -3'
miRNA:   3'- gUCGUGCGaCuaGCaaC-AGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 53437 0.71 0.684677
Target:  5'- uCGGCGCGCg---CGUgccgCAGCGCGCg -3'
miRNA:   3'- -GUCGUGCGacuaGCAaca-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 100501 0.72 0.642546
Target:  5'- uCGGCGCGCcGcUCGgccUCGGCGCGCa -3'
miRNA:   3'- -GUCGUGCGaCuAGCaacAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 70260 0.76 0.458312
Target:  5'- gGGCGCGCgg--CGUUGcucUCGGCGCGCg -3'
miRNA:   3'- gUCGUGCGacuaGCAAC---AGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 122349 0.8 0.251933
Target:  5'- --aCGCGCUGAUCGUUGggCGGCGUGCg -3'
miRNA:   3'- gucGUGCGACUAGCAACa-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 116660 0.7 0.756229
Target:  5'- gGGCACGCUGGUggccugCGUguggGUCcGGCGCuGCg -3'
miRNA:   3'- gUCGUGCGACUA------GCAa---CAG-UCGCG-UG- -5'
6388 5' -53.9 NC_001847.1 + 74098 0.7 0.775771
Target:  5'- uGGCACGCUGGUgccCGggG-CGGcCGCGCc -3'
miRNA:   3'- gUCGUGCGACUA---GCaaCaGUC-GCGUG- -5'
6388 5' -53.9 NC_001847.1 + 72052 0.68 0.847688
Target:  5'- -cGCACGCg---CGgcgGUUGGCGCGCa -3'
miRNA:   3'- guCGUGCGacuaGCaa-CAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 30510 0.69 0.839342
Target:  5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3'
miRNA:   3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 104932 0.69 0.830795
Target:  5'- gGGCGCGCg---CGgcuUCGGCGCGCg -3'
miRNA:   3'- gUCGUGCGacuaGCaacAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35667 0.69 0.813131
Target:  5'- gCGGauCGCGCUGAUC-UUGgccccgagCGGCGCGCu -3'
miRNA:   3'- -GUC--GUGCGACUAGcAACa-------GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 113326 0.69 0.804031
Target:  5'- gCGGCugGUgcaaGUCGgugUGgCAGCGCACg -3'
miRNA:   3'- -GUCGugCGac--UAGCa--ACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 92712 0.69 0.798491
Target:  5'- gAGCGCGCgccAUCGccgccaccggcgccgUcGUCAGCGCGCg -3'
miRNA:   3'- gUCGUGCGac-UAGC---------------AaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 62425 0.69 0.794765
Target:  5'- uCAGCGCGUaggUGAgCGUguuuucGUCGGCGCGg -3'
miRNA:   3'- -GUCGUGCG---ACUaGCAa-----CAGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 45189 0.7 0.785342
Target:  5'- -cGCGCGCUGGcagUCGUcucgCAGCGCGa -3'
miRNA:   3'- guCGUGCGACU---AGCAaca-GUCGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.