Results 101 - 109 of 109 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 72052 | 0.68 | 0.847688 |
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Target: 5'- -cGCACGCg---CGgcgGUUGGCGCGCa -3' miRNA: 3'- guCGUGCGacuaGCaa-CAGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 30510 | 0.69 | 0.839342 |
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Target: 5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3' miRNA: 3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 116292 | 0.69 | 0.839342 |
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Target: 5'- gCAGCGugcccCGCUGAccCGUg--CGGCGCGCg -3' miRNA: 3'- -GUCGU-----GCGACUa-GCAacaGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 107142 | 0.69 | 0.830795 |
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Target: 5'- gCGGCACGCcGcgCGcUG-CAGCGCGg -3' miRNA: 3'- -GUCGUGCGaCuaGCaACaGUCGCGUg -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 104932 | 0.69 | 0.830795 |
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Target: 5'- gGGCGCGCg---CGgcuUCGGCGCGCg -3' miRNA: 3'- gUCGUGCGacuaGCaacAGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 35667 | 0.69 | 0.813131 |
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Target: 5'- gCGGauCGCGCUGAUC-UUGgccccgagCGGCGCGCu -3' miRNA: 3'- -GUC--GUGCGACUAGcAACa-------GUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 113326 | 0.69 | 0.804031 |
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Target: 5'- gCGGCugGUgcaaGUCGgugUGgCAGCGCACg -3' miRNA: 3'- -GUCGugCGac--UAGCa--ACaGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 92712 | 0.69 | 0.798491 |
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Target: 5'- gAGCGCGCgccAUCGccgccaccggcgccgUcGUCAGCGCGCg -3' miRNA: 3'- gUCGUGCGac-UAGC---------------AaCAGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 97751 | 1.09 | 0.003661 |
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Target: 5'- cCAGCACGCUGAUCGUUGUCAGCGCACc -3' miRNA: 3'- -GUCGUGCGACUAGCAACAGUCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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