miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 103760 0.68 0.871443
Target:  5'- -cGCGCGCUGGgacUUGggUGcUCAGgGCGCg -3'
miRNA:   3'- guCGUGCGACU---AGCa-AC-AGUCgCGUG- -5'
6388 5' -53.9 NC_001847.1 + 37682 0.68 0.878911
Target:  5'- uUAGCGCGCggcccugGcgCGgcugCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGa------CuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 53295 0.68 0.878911
Target:  5'- -cGCGCGCUcGAUCGccGcCAGUGCGg -3'
miRNA:   3'- guCGUGCGA-CUAGCaaCaGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 30740 0.67 0.893138
Target:  5'- -cGCGCGCUGGccCGag--CGGCGCGCu -3'
miRNA:   3'- guCGUGCGACUa-GCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 46193 0.67 0.893138
Target:  5'- gGGCGCGgaGAggUCGgcgUGUCcgucGCGCAUg -3'
miRNA:   3'- gUCGUGCgaCU--AGCa--ACAGu---CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 47688 0.67 0.893138
Target:  5'- gGGCGCGCgccgcggGGcCGUUG--AGCGCGCg -3'
miRNA:   3'- gUCGUGCGa------CUaGCAACagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 33317 0.67 0.899887
Target:  5'- gCAGCcUGUUGuUCGUgg-CGGCGCGCu -3'
miRNA:   3'- -GUCGuGCGACuAGCAacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 104889 0.67 0.899887
Target:  5'- gCGGCGCGCUGcaaCGccGcCAGCGaCACg -3'
miRNA:   3'- -GUCGUGCGACua-GCaaCaGUCGC-GUG- -5'
6388 5' -53.9 NC_001847.1 + 56727 0.67 0.912639
Target:  5'- uCAGCGCGCg---CGccagCAGCGCGCc -3'
miRNA:   3'- -GUCGUGCGacuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 97009 0.67 0.912639
Target:  5'- uCGGCgGCGCUGGccgCGggGggCAGCGCGu -3'
miRNA:   3'- -GUCG-UGCGACUa--GCaaCa-GUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 90227 0.67 0.912639
Target:  5'- aCAGCACGCg---CGc-GUC-GCGCACg -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 27985 0.7 0.766064
Target:  5'- uGGCgccGCGCUGGgccgCGcUG-CAGCGCGCg -3'
miRNA:   3'- gUCG---UGCGACUa---GCaACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77617 0.7 0.756229
Target:  5'- gCGGCGcCGCUGggCGagGaCGGCGCGCc -3'
miRNA:   3'- -GUCGU-GCGACuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 17681 0.71 0.726063
Target:  5'- aGGCGCGCaccgccagUGG-CGUUGUCGGC-CACg -3'
miRNA:   3'- gUCGUGCG--------ACUaGCAACAGUCGcGUG- -5'
6388 5' -53.9 NC_001847.1 + 46502 0.71 0.705503
Target:  5'- aCAGCACGCUGAgcaGgc-UCucGCGCACg -3'
miRNA:   3'- -GUCGUGCGACUag-CaacAGu-CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 104402 0.71 0.695118
Target:  5'- cCAGCGCGCcGcUCGg-GcCAGCGCGCg -3'
miRNA:   3'- -GUCGUGCGaCuAGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 15449 0.72 0.631968
Target:  5'- uGGCGCuGCUGAaaagCGUgg-CGGCGCACg -3'
miRNA:   3'- gUCGUG-CGACUa---GCAacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 74751 0.74 0.517376
Target:  5'- cCGGCugGgaGA-CGcgGUCGGCGCGCg -3'
miRNA:   3'- -GUCGugCgaCUaGCaaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 70996 0.75 0.487422
Target:  5'- aCGGCGCGCUGAcggagguuUCGU--UCGGCGCGg -3'
miRNA:   3'- -GUCGUGCGACU--------AGCAacAGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 19628 0.66 0.944799
Target:  5'- cCGGgGCGC----CGgcGUCGGCGCGCg -3'
miRNA:   3'- -GUCgUGCGacuaGCaaCAGUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.