Results 101 - 109 of 109 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 9809 | 0.68 | 0.863745 |
|
Target: 5'- cCGGC-CGCUGG-CGU--UCAGCGCGg -3' miRNA: 3'- -GUCGuGCGACUaGCAacAGUCGCGUg -5' |
|||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 43717 | 0.68 | 0.855825 |
|
Target: 5'- -cGCGCGCUGcgCGcggacgUGgUGGCGCACu -3' miRNA: 3'- guCGUGCGACuaGCa-----ACaGUCGCGUG- -5' |
|||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 26758 | 0.68 | 0.855825 |
|
Target: 5'- gAGCGCgGgUGcgCGgccugGUCAGUGCGCg -3' miRNA: 3'- gUCGUG-CgACuaGCaa---CAGUCGCGUG- -5' |
|||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 31206 | 0.68 | 0.847688 |
|
Target: 5'- -uGCucuCGCUGAgggcgCGgcGUgGGCGCGCg -3' miRNA: 3'- guCGu--GCGACUa----GCaaCAgUCGCGUG- -5' |
|||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 133323 | 0.69 | 0.839342 |
|
Target: 5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3' miRNA: 3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5' |
|||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 74350 | 0.69 | 0.839342 |
|
Target: 5'- -cGCGCGCUGGUggcgcgCGUgg-UGGCGCGCg -3' miRNA: 3'- guCGUGCGACUA------GCAacaGUCGCGUG- -5' |
|||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 70284 | 0.69 | 0.830795 |
|
Target: 5'- -cGCGCGcCUGG-CGggGUCgcGGCGCGCc -3' miRNA: 3'- guCGUGC-GACUaGCaaCAG--UCGCGUG- -5' |
|||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 77851 | 0.69 | 0.830795 |
|
Target: 5'- cCAGCGCGCUGGgggcgcucUCGgcccgggaguuuUUGaaCAGCGCGCu -3' miRNA: 3'- -GUCGUGCGACU--------AGC------------AACa-GUCGCGUG- -5' |
|||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 18600 | 0.76 | 0.420998 |
|
Target: 5'- uUAGCGCGCcGuccgCGgcGUCGGCGCGCg -3' miRNA: 3'- -GUCGUGCGaCua--GCaaCAGUCGCGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home