miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6389 3' -53.2 NC_001847.1 + 80198 0.65 0.971562
Target:  5'- uGCGGGCGgguGCGcCgcgaagcgcaggGCGCUcaagacccccgcgaGCUCCCg -3'
miRNA:   3'- -UGCUCGCauuUGCaG------------UGCGA--------------CGAGGG- -5'
6389 3' -53.2 NC_001847.1 + 4551 0.66 0.969496
Target:  5'- cGCGucuccGGCGccguCGUCcuCGCUGCUCuCCg -3'
miRNA:   3'- -UGC-----UCGCauuuGCAGu-GCGACGAG-GG- -5'
6389 3' -53.2 NC_001847.1 + 107441 0.66 0.969496
Target:  5'- cGCGGGCGgcccgccGGCGcUCGCGC-GCcucagCCCg -3'
miRNA:   3'- -UGCUCGCau-----UUGC-AGUGCGaCGa----GGG- -5'
6389 3' -53.2 NC_001847.1 + 107364 0.66 0.969496
Target:  5'- cGCGucuccGGCGccguCGUCcuCGCUGCUCuCCg -3'
miRNA:   3'- -UGC-----UCGCauuuGCAGu-GCGACGAG-GG- -5'
6389 3' -53.2 NC_001847.1 + 4628 0.66 0.969496
Target:  5'- cGCGGGCGgcccgccGGCGcUCGCGC-GCcucagCCCg -3'
miRNA:   3'- -UGCUCGCau-----UUGC-AGUGCGaCGa----GGG- -5'
6389 3' -53.2 NC_001847.1 + 35915 0.66 0.969496
Target:  5'- aACGAGCGgcaUGGACcggcgGUCGCGCgcGCUUgCg -3'
miRNA:   3'- -UGCUCGC---AUUUG-----CAGUGCGa-CGAGgG- -5'
6389 3' -53.2 NC_001847.1 + 58925 0.66 0.969496
Target:  5'- gACGAG-GUcgGCacgCGCGCUGCUCa- -3'
miRNA:   3'- -UGCUCgCAuuUGca-GUGCGACGAGgg -5'
6389 3' -53.2 NC_001847.1 + 120942 0.66 0.969496
Target:  5'- cGCGGGCGUGGugGcUgAUGUggGCggaCCCa -3'
miRNA:   3'- -UGCUCGCAUUugC-AgUGCGa-CGa--GGG- -5'
6389 3' -53.2 NC_001847.1 + 70293 0.66 0.969496
Target:  5'- gGCGGggucGCGgc-GCGcCGCGCUGgUCUCg -3'
miRNA:   3'- -UGCU----CGCauuUGCaGUGCGACgAGGG- -5'
6389 3' -53.2 NC_001847.1 + 78299 0.66 0.966685
Target:  5'- cCGGGCGcAGACGgcgcggcgcggcgcgCGCGCcGCgggCCCg -3'
miRNA:   3'- uGCUCGCaUUUGCa--------------GUGCGaCGa--GGG- -5'
6389 3' -53.2 NC_001847.1 + 54270 0.66 0.966361
Target:  5'- gACGAGCGgcucgAGGCGcucaucCGCGCgUGCUacgaCCa -3'
miRNA:   3'- -UGCUCGCa----UUUGCa-----GUGCG-ACGAg---GG- -5'
6389 3' -53.2 NC_001847.1 + 105059 0.66 0.966361
Target:  5'- cGCGGGCGUGugguaguccccgGGCGgCACGCgGCggaagCCg -3'
miRNA:   3'- -UGCUCGCAU------------UUGCaGUGCGaCGa----GGg -5'
6389 3' -53.2 NC_001847.1 + 76904 0.66 0.966361
Target:  5'- -aGGGCGgucgcGCGcCGcCGCUGCcgCCCg -3'
miRNA:   3'- ugCUCGCauu--UGCaGU-GCGACGa-GGG- -5'
6389 3' -53.2 NC_001847.1 + 32804 0.66 0.966361
Target:  5'- cCGAGCGcucuuUGAGCG-CGCGCgagcGCgcgaggCCCg -3'
miRNA:   3'- uGCUCGC-----AUUUGCaGUGCGa---CGa-----GGG- -5'
6389 3' -53.2 NC_001847.1 + 2246 0.66 0.966361
Target:  5'- cGCGGGCGUGugguaguccccgGGCGgCACGCgGCggaagCCg -3'
miRNA:   3'- -UGCUCGCAU------------UUGCaGUGCGaCGa----GGg -5'
6389 3' -53.2 NC_001847.1 + 3307 0.66 0.966361
Target:  5'- gGCGAGCGcgGcGCGg-GCGCcGCUgCCg -3'
miRNA:   3'- -UGCUCGCa-UuUGCagUGCGaCGAgGG- -5'
6389 3' -53.2 NC_001847.1 + 11843 0.66 0.966361
Target:  5'- -gGGGCGccuagcggaggaUGGACuugaGUCGCGCUGCUaCCa -3'
miRNA:   3'- ugCUCGC------------AUUUG----CAGUGCGACGAgGG- -5'
6389 3' -53.2 NC_001847.1 + 36327 0.66 0.966361
Target:  5'- cGCGAGgGU--GCGUCcUGCcGC-CCCg -3'
miRNA:   3'- -UGCUCgCAuuUGCAGuGCGaCGaGGG- -5'
6389 3' -53.2 NC_001847.1 + 86202 0.66 0.966361
Target:  5'- -gGGGCGguccaGUCGCGCgccUGCgCCCg -3'
miRNA:   3'- ugCUCGCauuugCAGUGCG---ACGaGGG- -5'
6389 3' -53.2 NC_001847.1 + 52413 0.66 0.966361
Target:  5'- cGCGGGCG---GCG-CGCGCUGUcgagCUCg -3'
miRNA:   3'- -UGCUCGCauuUGCaGUGCGACGa---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.