miRNA display CGI


Results 1 - 20 of 167 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6389 3' -53.2 NC_001847.1 + 1059 0.71 0.76347
Target:  5'- aGCaAGCGgcGGCGcCGggcuguuCGCUGCUCCCc -3'
miRNA:   3'- -UGcUCGCauUUGCaGU-------GCGACGAGGG- -5'
6389 3' -53.2 NC_001847.1 + 1134 0.66 0.955612
Target:  5'- cACcAGCGgcGGCGccucggCGCGCgGCUCCg -3'
miRNA:   3'- -UGcUCGCauUUGCa-----GUGCGaCGAGGg -5'
6389 3' -53.2 NC_001847.1 + 1515 0.67 0.937963
Target:  5'- cCGcGCGUAGGCGgccucggcgCGCGCgaagGCgCCCg -3'
miRNA:   3'- uGCuCGCAUUUGCa--------GUGCGa---CGaGGG- -5'
6389 3' -53.2 NC_001847.1 + 1723 0.71 0.783543
Target:  5'- gACGAGCuUGcACGUCAUGCUGUcgcaagCCUg -3'
miRNA:   3'- -UGCUCGcAUuUGCAGUGCGACGa-----GGG- -5'
6389 3' -53.2 NC_001847.1 + 2246 0.66 0.966361
Target:  5'- cGCGGGCGUGugguaguccccgGGCGgCACGCgGCggaagCCg -3'
miRNA:   3'- -UGCUCGCAU------------UUGCaGUGCGaCGa----GGg -5'
6389 3' -53.2 NC_001847.1 + 2307 0.7 0.829516
Target:  5'- cCGGGCGgcAugGgccccagCACGCgggcgggcagcggcgGCUCCCg -3'
miRNA:   3'- uGCUCGCauUugCa------GUGCGa--------------CGAGGG- -5'
6389 3' -53.2 NC_001847.1 + 3307 0.66 0.966361
Target:  5'- gGCGAGCGcgGcGCGg-GCGCcGCUgCCg -3'
miRNA:   3'- -UGCUCGCa-UuUGCagUGCGaCGAgGG- -5'
6389 3' -53.2 NC_001847.1 + 3636 0.66 0.962659
Target:  5'- gGCGcGCGUAcaccagguccaccAGCGcCGCGUacUGCUUCCc -3'
miRNA:   3'- -UGCuCGCAU-------------UUGCaGUGCG--ACGAGGG- -5'
6389 3' -53.2 NC_001847.1 + 3812 0.73 0.673533
Target:  5'- cCGGGCGgcGGCGgCGCGCUGCcgggCCa -3'
miRNA:   3'- uGCUCGCauUUGCaGUGCGACGa---GGg -5'
6389 3' -53.2 NC_001847.1 + 3829 0.74 0.621338
Target:  5'- cGCGAGCGU-GGCGuuguUCGCGCcGC-CCCa -3'
miRNA:   3'- -UGCUCGCAuUUGC----AGUGCGaCGaGGG- -5'
6389 3' -53.2 NC_001847.1 + 4551 0.66 0.969496
Target:  5'- cGCGucuccGGCGccguCGUCcuCGCUGCUCuCCg -3'
miRNA:   3'- -UGC-----UCGCauuuGCAGu-GCGACGAG-GG- -5'
6389 3' -53.2 NC_001847.1 + 4628 0.66 0.969496
Target:  5'- cGCGGGCGgcccgccGGCGcUCGCGC-GCcucagCCCg -3'
miRNA:   3'- -UGCUCGCau-----UUGC-AGUGCGaCGa----GGG- -5'
6389 3' -53.2 NC_001847.1 + 5616 0.72 0.724838
Target:  5'- gACGGGCGUGGGCG-C-CGC-GgUCCCg -3'
miRNA:   3'- -UGCUCGCAUUUGCaGuGCGaCgAGGG- -5'
6389 3' -53.2 NC_001847.1 + 7154 0.7 0.853559
Target:  5'- uCGGGCGU----GUCGCGCUcGCUCgCCc -3'
miRNA:   3'- uGCUCGCAuuugCAGUGCGA-CGAG-GG- -5'
6389 3' -53.2 NC_001847.1 + 7259 0.7 0.853559
Target:  5'- uGCGGGCGc-GGCGggggCACGCgagacGCUCCg -3'
miRNA:   3'- -UGCUCGCauUUGCa---GUGCGa----CGAGGg -5'
6389 3' -53.2 NC_001847.1 + 7348 0.66 0.955612
Target:  5'- aGCG-GUgGUAGcCGUCagcGCGCUGCUgCCg -3'
miRNA:   3'- -UGCuCG-CAUUuGCAG---UGCGACGAgGG- -5'
6389 3' -53.2 NC_001847.1 + 9525 0.71 0.76347
Target:  5'- aGCGGGCGgcgcgcuAGCGUCcgugcgugcgccaGCGCUGCagCCg -3'
miRNA:   3'- -UGCUCGCau-----UUGCAG-------------UGCGACGagGG- -5'
6389 3' -53.2 NC_001847.1 + 10571 0.7 0.853559
Target:  5'- aACGcAGaccuGUAcgcaGACGcCGCGCUGCUCUCg -3'
miRNA:   3'- -UGC-UCg---CAU----UUGCaGUGCGACGAGGG- -5'
6389 3' -53.2 NC_001847.1 + 11843 0.66 0.966361
Target:  5'- -gGGGCGccuagcggaggaUGGACuugaGUCGCGCUGCUaCCa -3'
miRNA:   3'- ugCUCGC------------AUUUG----CAGUGCGACGAgGG- -5'
6389 3' -53.2 NC_001847.1 + 12042 0.69 0.876579
Target:  5'- -gGAGCGcUGGACGcccugCGCGCUGCggacgCCg -3'
miRNA:   3'- ugCUCGC-AUUUGCa----GUGCGACGa----GGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.