miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6389 5' -65 NC_001847.1 + 4680 0.66 0.484935
Target:  5'- --cAGGGC-CGGGucuuccuCCGaGCCCCCcgucgGGCCg -3'
miRNA:   3'- uuuUCUCGcGCCC-------GGC-CGGGGG-----CCGG- -5'
6389 5' -65 NC_001847.1 + 107493 0.66 0.484935
Target:  5'- --cAGGGC-CGGGucuuccuCCGaGCCCCCcgucgGGCCg -3'
miRNA:   3'- uuuUCUCGcGCCC-------GGC-CGGGGG-----CCGG- -5'
6389 5' -65 NC_001847.1 + 45754 0.66 0.483118
Target:  5'- ----cAGCGcCGGGUCGGCgaucuuggcgugagCUUCGGCCa -3'
miRNA:   3'- uuuucUCGC-GCCCGGCCG--------------GGGGCCGG- -5'
6389 5' -65 NC_001847.1 + 361 0.66 0.476785
Target:  5'- -----cGCGCcccgGGGCCcGCCCCgCGcGCCg -3'
miRNA:   3'- uuuucuCGCG----CCCGGcCGGGG-GC-CGG- -5'
6389 5' -65 NC_001847.1 + 134812 0.66 0.476785
Target:  5'- cGGGAGGGaCGCGGGCgUGGagcgcgaagCUCCGGCg -3'
miRNA:   3'- -UUUUCUC-GCGCCCG-GCCg--------GGGGCCGg -5'
6389 5' -65 NC_001847.1 + 10423 0.66 0.476785
Target:  5'- -----cGCGCGGuucgcgcuGCC-GCCCCCGcGCCc -3'
miRNA:   3'- uuuucuCGCGCC--------CGGcCGGGGGC-CGG- -5'
6389 5' -65 NC_001847.1 + 7905 0.66 0.476785
Target:  5'- --cGGGGCGCGcGG-CGGCCgCCGcuucuucccccGCCg -3'
miRNA:   3'- uuuUCUCGCGC-CCgGCCGGgGGC-----------CGG- -5'
6389 5' -65 NC_001847.1 + 94330 0.66 0.476785
Target:  5'- ---cGGGCuGCuGGGCCGGCacauccucaCCgCGGUCg -3'
miRNA:   3'- uuuuCUCG-CG-CCCGGCCGg--------GG-GCCGG- -5'
6389 5' -65 NC_001847.1 + 103174 0.66 0.476785
Target:  5'- -----cGCGCcccgGGGCCcGCCCCgCGcGCCg -3'
miRNA:   3'- uuuucuCGCG----CCCGGcCGGGG-GC-CGG- -5'
6389 5' -65 NC_001847.1 + 44386 0.66 0.476785
Target:  5'- -cAAGGGCGCucccgcucccgGGGcCCGGCCa-CGcGCCg -3'
miRNA:   3'- uuUUCUCGCG-----------CCC-GGCCGGggGC-CGG- -5'
6389 5' -65 NC_001847.1 + 17307 0.66 0.476785
Target:  5'- --cAGAG-GuCGGGCCGGUCCgCUcuuguggugcagGGCCa -3'
miRNA:   3'- uuuUCUCgC-GCCCGGCCGGG-GG------------CCGG- -5'
6389 5' -65 NC_001847.1 + 46242 0.66 0.476785
Target:  5'- -----cGCGCaagGGaGCC-GCCCCCGGCg -3'
miRNA:   3'- uuuucuCGCG---CC-CGGcCGGGGGCCGg -5'
6389 5' -65 NC_001847.1 + 123047 0.66 0.476785
Target:  5'- uGGAAGuacGGcCGCGGgcGCCGGaCCCgCGGCg -3'
miRNA:   3'- -UUUUC---UC-GCGCC--CGGCC-GGGgGCCGg -5'
6389 5' -65 NC_001847.1 + 46322 0.66 0.476785
Target:  5'- ---cGAGCGCa-GCaCGGCCgCCCgcggGGCCg -3'
miRNA:   3'- uuuuCUCGCGccCG-GCCGG-GGG----CCGG- -5'
6389 5' -65 NC_001847.1 + 31999 0.66 0.476785
Target:  5'- cGGGAGGGaCGCGGGCgUGGagcgcgaagCUCCGGCg -3'
miRNA:   3'- -UUUUCUC-GCGCCCG-GCCg--------GGGGCCGg -5'
6389 5' -65 NC_001847.1 + 126505 0.66 0.476785
Target:  5'- ---uGGGCGCccgaguccgcaGcGGCCGcuCCCCCGGCg -3'
miRNA:   3'- uuuuCUCGCG-----------C-CCGGCc-GGGGGCCGg -5'
6389 5' -65 NC_001847.1 + 125456 0.66 0.476785
Target:  5'- cGGAGGAcGgGCGGGUCGGCggcagCUCgCGGCg -3'
miRNA:   3'- -UUUUCU-CgCGCCCGGCCG-----GGG-GCCGg -5'
6389 5' -65 NC_001847.1 + 120925 0.66 0.476785
Target:  5'- -cGAGGGCG-GGGCgGGCgCgCGGgCg -3'
miRNA:   3'- uuUUCUCGCgCCCGgCCGgGgGCCgG- -5'
6389 5' -65 NC_001847.1 + 56740 0.66 0.476785
Target:  5'- --cAGcAGCGCGcccgcagcGGCgGgGUCCUCGGCCa -3'
miRNA:   3'- uuuUC-UCGCGC--------CCGgC-CGGGGGCCGG- -5'
6389 5' -65 NC_001847.1 + 110226 0.66 0.475884
Target:  5'- ---cGAcGUGCGGGCCGuGCUaaacaugCgCGGCCu -3'
miRNA:   3'- uuuuCU-CGCGCCCGGC-CGG-------GgGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.