miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6389 5' -65 NC_001847.1 + 97540 1.09 0.000387
Target:  5'- cAAAAGAGCGCGGGCCGGCCCCCGGCCg -3'
miRNA:   3'- -UUUUCUCGCGCCCGGCCGGGGGCCGG- -5'
6389 5' -65 NC_001847.1 + 124542 0.83 0.030709
Target:  5'- --cAGGGCGCGGGCCGGCg-CCGGCCc -3'
miRNA:   3'- uuuUCUCGCGCCCGGCCGggGGCCGG- -5'
6389 5' -65 NC_001847.1 + 21729 0.83 0.030709
Target:  5'- --cAGGGCGCGGGCCGGCg-CCGGCCc -3'
miRNA:   3'- uuuUCUCGCGCCCGGCCGggGGCCGG- -5'
6389 5' -65 NC_001847.1 + 4870 0.8 0.054469
Target:  5'- gGGGGGGGCgGCGGGCagcggcagGGCCCCCGcGCCg -3'
miRNA:   3'- -UUUUCUCG-CGCCCGg-------CCGGGGGC-CGG- -5'
6389 5' -65 NC_001847.1 + 107683 0.8 0.054469
Target:  5'- gGGGGGGGCgGCGGGCagcggcagGGCCCCCGcGCCg -3'
miRNA:   3'- -UUUUCUCG-CGCCCGg-------CCGGGGGC-CGG- -5'
6389 5' -65 NC_001847.1 + 32102 0.79 0.065249
Target:  5'- --cGGGGCGCGaGGCCcgggcucgGGCCCCCGGgCg -3'
miRNA:   3'- uuuUCUCGCGC-CCGG--------CCGGGGGCCgG- -5'
6389 5' -65 NC_001847.1 + 134915 0.79 0.065249
Target:  5'- --cGGGGCGCGaGGCCcgggcucgGGCCCCCGGgCg -3'
miRNA:   3'- uuuUCUCGCGC-CCGG--------CCGGGGGCCgG- -5'
6389 5' -65 NC_001847.1 + 12082 0.78 0.068691
Target:  5'- --cGGAGCgccGCGGGuCCGGCgCCCgCGGCCg -3'
miRNA:   3'- uuuUCUCG---CGCCC-GGCCG-GGG-GCCGG- -5'
6389 5' -65 NC_001847.1 + 83023 0.77 0.082161
Target:  5'- --uGGGGCGCc-GCCGGCCCgCGGCCg -3'
miRNA:   3'- uuuUCUCGCGccCGGCCGGGgGCCGG- -5'
6389 5' -65 NC_001847.1 + 46917 0.77 0.082161
Target:  5'- cGGGGGGCGCgucGGGCCcgGGCUCCgGGCCg -3'
miRNA:   3'- uUUUCUCGCG---CCCGG--CCGGGGgCCGG- -5'
6389 5' -65 NC_001847.1 + 69689 0.77 0.084281
Target:  5'- ---uGGGCGCgGGGCCGGCgCUCGGUCc -3'
miRNA:   3'- uuuuCUCGCG-CCCGGCCGgGGGCCGG- -5'
6389 5' -65 NC_001847.1 + 134867 0.77 0.086452
Target:  5'- -----cGCGCGGGCucggCGGCCCCCGGgCu -3'
miRNA:   3'- uuuucuCGCGCCCG----GCCGGGGGCCgG- -5'
6389 5' -65 NC_001847.1 + 32054 0.77 0.086452
Target:  5'- -----cGCGCGGGCucggCGGCCCCCGGgCu -3'
miRNA:   3'- uuuucuCGCGCCCG----GCCGGGGGCCgG- -5'
6389 5' -65 NC_001847.1 + 129746 0.77 0.086452
Target:  5'- ---uGAGCGCGcGGCCuGuGCCgCCGGCCg -3'
miRNA:   3'- uuuuCUCGCGC-CCGG-C-CGGgGGCCGG- -5'
6389 5' -65 NC_001847.1 + 22644 0.77 0.088677
Target:  5'- cGGGGAGgGCGGGCUuGCCCCgGGCg -3'
miRNA:   3'- uUUUCUCgCGCCCGGcCGGGGgCCGg -5'
6389 5' -65 NC_001847.1 + 88362 0.77 0.088677
Target:  5'- cGAGGGGcGCGCGGGCgCGGCggaCCGGCCc -3'
miRNA:   3'- -UUUUCU-CGCGCCCG-GCCGgg-GGCCGG- -5'
6389 5' -65 NC_001847.1 + 102074 0.77 0.088677
Target:  5'- cAAGGGcaGGCGCGGGCCGcGCgcgaCCCGGUCa -3'
miRNA:   3'- -UUUUC--UCGCGCCCGGC-CGg---GGGCCGG- -5'
6389 5' -65 NC_001847.1 + 125457 0.77 0.088677
Target:  5'- cGGGGAGgGCGGGCUuGCCCCgGGCg -3'
miRNA:   3'- uUUUCUCgCGCCCGGcCGGGGgCCGg -5'
6389 5' -65 NC_001847.1 + 31399 0.76 0.098132
Target:  5'- ---cGGGCGCGGGCUcgGGCuUCCCGGCg -3'
miRNA:   3'- uuuuCUCGCGCCCGG--CCG-GGGGCCGg -5'
6389 5' -65 NC_001847.1 + 12309 0.76 0.098132
Target:  5'- --cAGGGCGCGGGCCcggugggcGcGCCCgCCGGCUc -3'
miRNA:   3'- uuuUCUCGCGCCCGG--------C-CGGG-GGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.