miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6389 5' -65 NC_001847.1 + 138 0.74 0.142687
Target:  5'- ------cCGCGGGCCucGGgCCCCGGCCg -3'
miRNA:   3'- uuuucucGCGCCCGG--CCgGGGGCCGG- -5'
6389 5' -65 NC_001847.1 + 159 0.67 0.399392
Target:  5'- cGGGGGGC-CGGGguucugcgucUUGGCCCCCggGGCCc -3'
miRNA:   3'- uUUUCUCGcGCCC----------GGCCGGGGG--CCGG- -5'
6389 5' -65 NC_001847.1 + 295 0.69 0.289676
Target:  5'- -----cGCGCGGGCgCcGUCCCCGcGCCc -3'
miRNA:   3'- uuuucuCGCGCCCG-GcCGGGGGC-CGG- -5'
6389 5' -65 NC_001847.1 + 361 0.66 0.476785
Target:  5'- -----cGCGCcccgGGGCCcGCCCCgCGcGCCg -3'
miRNA:   3'- uuuucuCGCG----CCCGGcCGGGG-GC-CGG- -5'
6389 5' -65 NC_001847.1 + 584 0.68 0.337716
Target:  5'- ----cGGCGcCGGGuCCuGGCCCUccgCGGCCg -3'
miRNA:   3'- uuuucUCGC-GCCC-GG-CCGGGG---GCCGG- -5'
6389 5' -65 NC_001847.1 + 758 0.74 0.135484
Target:  5'- --uAGGGCGa-GGCCGGCCCgccgccggcggcgCCGGCCu -3'
miRNA:   3'- uuuUCUCGCgcCCGGCCGGG-------------GGCCGG- -5'
6389 5' -65 NC_001847.1 + 891 0.7 0.252905
Target:  5'- -----cGCGCcgGGGCCgccgcGGCCgCCGGCCg -3'
miRNA:   3'- uuuucuCGCG--CCCGG-----CCGGgGGCCGG- -5'
6389 5' -65 NC_001847.1 + 1103 0.67 0.383311
Target:  5'- ----cGGcCGCGGGCgGcGCCgCCgCGGCCu -3'
miRNA:   3'- uuuucUC-GCGCCCGgC-CGG-GG-GCCGG- -5'
6389 5' -65 NC_001847.1 + 1430 0.73 0.177667
Target:  5'- --cGGuGCGCGGGCCcaGGCgCgUGGCCa -3'
miRNA:   3'- uuuUCuCGCGCCCGG--CCGgGgGCCGG- -5'
6389 5' -65 NC_001847.1 + 1917 0.66 0.450125
Target:  5'- cGAGAGcccgccgcGGCGCGgcGGCCacucgGGCCgCCGGCg -3'
miRNA:   3'- -UUUUC--------UCGCGC--CCGG-----CCGGgGGCCGg -5'
6389 5' -65 NC_001847.1 + 2095 0.67 0.415898
Target:  5'- --cGGGGCccgcgcggcgGCGGGCCGcGaUCUCGGCCa -3'
miRNA:   3'- uuuUCUCG----------CGCCCGGC-CgGGGGCCGG- -5'
6389 5' -65 NC_001847.1 + 2242 0.71 0.24153
Target:  5'- ---uGGGCGCGGGCgugUGGUaguCCCCGGgCg -3'
miRNA:   3'- uuuuCUCGCGCCCG---GCCG---GGGGCCgG- -5'
6389 5' -65 NC_001847.1 + 2335 0.68 0.337716
Target:  5'- ---cGGGCaGCGGcggcucccGCCGcGCCggCCCGGCCg -3'
miRNA:   3'- uuuuCUCG-CGCC--------CGGC-CGG--GGGCCGG- -5'
6389 5' -65 NC_001847.1 + 2377 0.68 0.345035
Target:  5'- ----cGGCgGCGGcuuuucGCCGGCgCCUCGGCCc -3'
miRNA:   3'- uuuucUCG-CGCC------CGGCCG-GGGGCCGG- -5'
6389 5' -65 NC_001847.1 + 2465 0.71 0.24153
Target:  5'- cGAucGAGCGgGcGGCgGcGCCCCCGccGCCg -3'
miRNA:   3'- -UUuuCUCGCgC-CCGgC-CGGGGGC--CGG- -5'
6389 5' -65 NC_001847.1 + 2572 0.74 0.14588
Target:  5'- ----cGGCGCGGGCgccugcgCGGCCgCCgCGGCCg -3'
miRNA:   3'- uuuucUCGCGCCCG-------GCCGG-GG-GCCGG- -5'
6389 5' -65 NC_001847.1 + 2764 0.71 0.24153
Target:  5'- ----cGGCGcCGGcGCCGGCgCCCCcGCCg -3'
miRNA:   3'- uuuucUCGC-GCC-CGGCCG-GGGGcCGG- -5'
6389 5' -65 NC_001847.1 + 2806 0.7 0.252905
Target:  5'- ---cGAGCGCGGccgccagccgcGCCGGCaCCUCcGCCg -3'
miRNA:   3'- uuuuCUCGCGCC-----------CGGCCG-GGGGcCGG- -5'
6389 5' -65 NC_001847.1 + 3088 0.66 0.450125
Target:  5'- ----cGGCGCGcaggccgcGGCCGGCaggCCgCGGCCc -3'
miRNA:   3'- uuuucUCGCGC--------CCGGCCGg--GG-GCCGG- -5'
6389 5' -65 NC_001847.1 + 3309 0.71 0.214449
Target:  5'- ---cGAGCGCGGcGCgGGCgCCgcugccgccggcgCCGGCCu -3'
miRNA:   3'- uuuuCUCGCGCC-CGgCCG-GG-------------GGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.