Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
639 | 5' | -66.5 | AC_000017.1 | + | 8671 | 0.69 | 0.095366 |
Target: 5'- --gGU-CCCGaGCCCccccuaccuccggGgGCCCGCCCGCg -3' miRNA: 3'- cuaCAcGGGC-CGGG-------------CgCGGGCGGGUG- -5' |
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639 | 5' | -66.5 | AC_000017.1 | + | 12493 | 0.67 | 0.118984 |
Target: 5'- cGGUG-GuCCCGGCgCGCGCaaaC-CCCACg -3' miRNA: 3'- -CUACaC-GGGCCGgGCGCGg--GcGGGUG- -5' |
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639 | 5' | -66.5 | AC_000017.1 | + | 13906 | 1.07 | 0.000065 |
Target: 5'- gGAUGUGCCCGGCCCGCGCCCGCCCACc -3' miRNA: 3'- -CUACACGGGCCGGGCGCGGGCGGGUG- -5' |
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639 | 5' | -66.5 | AC_000017.1 | + | 16081 | 0.66 | 0.149143 |
Target: 5'- uGGUGcGCCCagugcGGCCgcguuugugCGCGCCCcaggggcgcgguaguGCCCGCg -3' miRNA: 3'- -CUACaCGGG-----CCGG---------GCGCGGG---------------CGGGUG- -5' |
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639 | 5' | -66.5 | AC_000017.1 | + | 16444 | 0.68 | 0.112689 |
Target: 5'- --cGUGCCCGuGCgcaCC-CGCCC-CCCGCg -3' miRNA: 3'- cuaCACGGGC-CG---GGcGCGGGcGGGUG- -5' |
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639 | 5' | -66.5 | AC_000017.1 | + | 16797 | 0.66 | 0.139878 |
Target: 5'- ----cGCCCGGUgaGCGCuCCaCCCGCa -3' miRNA: 3'- cuacaCGGGCCGggCGCG-GGcGGGUG- -5' |
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639 | 5' | -66.5 | AC_000017.1 | + | 18028 | 0.7 | 0.06669 |
Target: 5'- -cUG-GCCCcgcgacacGGCUCGCGCCCGUUCAUg -3' miRNA: 3'- cuACaCGGG--------CCGGGCGCGGGCGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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