miRNA display CGI


Results 21 - 40 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6390 3' -64.7 NC_001847.1 + 39853 0.66 0.50483
Target:  5'- cGCGCCAGccGCCgguaggcuucguccaCGCGGC-CCGGg -3'
miRNA:   3'- -UGCGGUCcuCGGag-------------GCGCCGaGGCCg -5'
6390 3' -64.7 NC_001847.1 + 5337 0.66 0.50483
Target:  5'- -gGCCGgucGGAGCUggcuagccggCCGCGGCuggaugucugucucUCUGGCu -3'
miRNA:   3'- ugCGGU---CCUCGGa---------GGCGCCG--------------AGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 108150 0.66 0.50483
Target:  5'- -gGCCGgucGGAGCUggcuagccggCCGCGGCuggaugucugucucUCUGGCu -3'
miRNA:   3'- ugCGGU---CCUCGGa---------GGCGCCG--------------AGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 81730 0.66 0.502068
Target:  5'- gACGCCaucauccggccgugcGGGuucAGCCU--GCGGCgCCGGCa -3'
miRNA:   3'- -UGCGG---------------UCC---UCGGAggCGCCGaGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 39479 0.66 0.498395
Target:  5'- gUGCCAuGGAGaCCagcccgCCGCgcaGGCUcCCGGUg -3'
miRNA:   3'- uGCGGU-CCUC-GGa-----GGCG---CCGA-GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 118120 0.66 0.498395
Target:  5'- cCGCCAGcGGGCCcgaaUCGCuGCUgaUCGGCg -3'
miRNA:   3'- uGCGGUC-CUCGGa---GGCGcCGA--GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 33274 0.66 0.498395
Target:  5'- nCGCaaaGGcGAGCucCUCCGCGaccuGCUCgCGGCa -3'
miRNA:   3'- uGCGg--UC-CUCG--GAGGCGC----CGAG-GCCG- -5'
6390 3' -64.7 NC_001847.1 + 44522 0.66 0.498395
Target:  5'- -aGCUGGccGCCgUCCGCGaGCUCgCGGUg -3'
miRNA:   3'- ugCGGUCcuCGG-AGGCGC-CGAG-GCCG- -5'
6390 3' -64.7 NC_001847.1 + 75131 0.66 0.498395
Target:  5'- -gGCCcGG-GCC-CCGcCGGggCCGGCg -3'
miRNA:   3'- ugCGGuCCuCGGaGGC-GCCgaGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 3212 0.66 0.498395
Target:  5'- uCGCCGGcGcacguGCCUCCGCGccGC-CgCGGCu -3'
miRNA:   3'- uGCGGUC-Cu----CGGAGGCGC--CGaG-GCCG- -5'
6390 3' -64.7 NC_001847.1 + 16350 0.66 0.498395
Target:  5'- -gGCCuGGAGgCgCUgGCGGCUgCCGGUg -3'
miRNA:   3'- ugCGGuCCUCgGaGG-CGCCGA-GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 5460 0.66 0.498395
Target:  5'- cGCGuCCcGGccGCuCUCUGCGGCggCGGCa -3'
miRNA:   3'- -UGC-GGuCCu-CG-GAGGCGCCGagGCCG- -5'
6390 3' -64.7 NC_001847.1 + 47216 0.66 0.498395
Target:  5'- cCG-CAGG-GCCUCCuCGGC-CaCGGCg -3'
miRNA:   3'- uGCgGUCCuCGGAGGcGCCGaG-GCCG- -5'
6390 3' -64.7 NC_001847.1 + 59868 0.66 0.498395
Target:  5'- uCGCCGaGGGCCggCgCGCGGCcUCCGcGUu -3'
miRNA:   3'- uGCGGUcCUCGGa-G-GCGCCG-AGGC-CG- -5'
6390 3' -64.7 NC_001847.1 + 125623 0.66 0.498395
Target:  5'- gACGCUAGcGcGCCgcCCGCucGGCUCgGGUc -3'
miRNA:   3'- -UGCGGUC-CuCGGa-GGCG--CCGAGgCCG- -5'
6390 3' -64.7 NC_001847.1 + 40098 0.66 0.498395
Target:  5'- cGCGCC-GGuGCCUCgguugguaggUGCGGCUgCGcGUg -3'
miRNA:   3'- -UGCGGuCCuCGGAG----------GCGCCGAgGC-CG- -5'
6390 3' -64.7 NC_001847.1 + 58571 0.66 0.498395
Target:  5'- gGCGaagauCGGGGGCCgggCCGcCGGCUgCgugGGCa -3'
miRNA:   3'- -UGCg----GUCCUCGGa--GGC-GCCGAgG---CCG- -5'
6390 3' -64.7 NC_001847.1 + 73162 0.66 0.498395
Target:  5'- cGCGCCgggcggAGGAGgCggaCGCGGCggcggagUCGGCc -3'
miRNA:   3'- -UGCGG------UCCUCgGag-GCGCCGa------GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 133276 0.66 0.498395
Target:  5'- cGCGUCua-AGCCgcgCgGUGcGCUCCGGCg -3'
miRNA:   3'- -UGCGGuccUCGGa--GgCGC-CGAGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 107870 0.66 0.498395
Target:  5'- cCGgCGGGcAGCCUCacaucCGGCUCucgCGGCa -3'
miRNA:   3'- uGCgGUCC-UCGGAGgc---GCCGAG---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.