miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6390 5' -50.4 NC_001847.1 + 69354 0.67 0.98809
Target:  5'- -cGCUGGUGcuggcgcGCGCGGcGg--UCUUUGCg -3'
miRNA:   3'- gaCGGUCAU-------UGCGCC-CaaaAGGAACG- -5'
6390 5' -50.4 NC_001847.1 + 26751 0.67 0.98664
Target:  5'- -gGCCGuagAGCGCGGGUgcgcggCCUggucagUGCg -3'
miRNA:   3'- gaCGGUca-UUGCGCCCAaaa---GGA------ACG- -5'
6390 5' -50.4 NC_001847.1 + 15554 0.67 0.98664
Target:  5'- -cGCCgGGUGGCGCGGGggaacccCCaucgGCg -3'
miRNA:   3'- gaCGG-UCAUUGCGCCCaaaa---GGaa--CG- -5'
6390 5' -50.4 NC_001847.1 + 61870 0.67 0.98664
Target:  5'- cCUGCCGGcgccCGCGGGggUUgCacgGCg -3'
miRNA:   3'- -GACGGUCauu-GCGCCCaaAAgGaa-CG- -5'
6390 5' -50.4 NC_001847.1 + 3724 0.67 0.984873
Target:  5'- -cGCCGcGUAGCGCGcGGccg-CCUcGCg -3'
miRNA:   3'- gaCGGU-CAUUGCGC-CCaaaaGGAaCG- -5'
6390 5' -50.4 NC_001847.1 + 106537 0.67 0.984873
Target:  5'- -cGCCGcGUAGCGCGcGGccg-CCUcGCg -3'
miRNA:   3'- gaCGGU-CAUUGCGC-CCaaaaGGAaCG- -5'
6390 5' -50.4 NC_001847.1 + 121031 0.67 0.982934
Target:  5'- -cGCCcGUGACgagguGCGGGUggUCCgccaGCg -3'
miRNA:   3'- gaCGGuCAUUG-----CGCCCAaaAGGaa--CG- -5'
6390 5' -50.4 NC_001847.1 + 75652 0.67 0.982934
Target:  5'- -aGCCGGaGGCGCGGGcgUUgCUcGUg -3'
miRNA:   3'- gaCGGUCaUUGCGCCCaaAAgGAaCG- -5'
6390 5' -50.4 NC_001847.1 + 13869 0.67 0.982934
Target:  5'- cCUGCUAGcgGACGCGGcacugCCgcuggUGCg -3'
miRNA:   3'- -GACGGUCa-UUGCGCCcaaaaGGa----ACG- -5'
6390 5' -50.4 NC_001847.1 + 10937 0.68 0.9785
Target:  5'- -aGCCGGcUGGCGCGGcuggcCUUUGCg -3'
miRNA:   3'- gaCGGUC-AUUGCGCCcaaaaGGAACG- -5'
6390 5' -50.4 NC_001847.1 + 6329 0.68 0.9785
Target:  5'- -gGCCAcGU-ACGCGGGUg--CCccgGCg -3'
miRNA:   3'- gaCGGU-CAuUGCGCCCAaaaGGaa-CG- -5'
6390 5' -50.4 NC_001847.1 + 49397 0.68 0.975988
Target:  5'- -gGCCugGGUGGCGCGGGgcugacggCCaaGCu -3'
miRNA:   3'- gaCGG--UCAUUGCGCCCaaaa----GGaaCG- -5'
6390 5' -50.4 NC_001847.1 + 104210 0.68 0.972698
Target:  5'- gCUGCCGGUAcucGCGCGGcGgcacgggcaCCgcggUGCg -3'
miRNA:   3'- -GACGGUCAU---UGCGCC-Caaaa-----GGa---ACG- -5'
6390 5' -50.4 NC_001847.1 + 1397 0.68 0.972698
Target:  5'- gCUGCCGGUAcucGCGCGGcGgcacgggcaCCgcggUGCg -3'
miRNA:   3'- -GACGGUCAU---UGCGCC-Caaaa-----GGa---ACG- -5'
6390 5' -50.4 NC_001847.1 + 49519 0.69 0.960147
Target:  5'- -cGCCGG--GCGCGGGgc-UCCccUGCu -3'
miRNA:   3'- gaCGGUCauUGCGCCCaaaAGGa-ACG- -5'
6390 5' -50.4 NC_001847.1 + 88245 0.7 0.943147
Target:  5'- -gGCCGGcgcGGCGCGGGgcg-CCggGCg -3'
miRNA:   3'- gaCGGUCa--UUGCGCCCaaaaGGaaCG- -5'
6390 5' -50.4 NC_001847.1 + 133724 0.7 0.938256
Target:  5'- gUGCCuGgcgGGCGCGGGg---CCgcgUGCc -3'
miRNA:   3'- gACGGuCa--UUGCGCCCaaaaGGa--ACG- -5'
6390 5' -50.4 NC_001847.1 + 21787 0.7 0.933104
Target:  5'- -cGCCGGccgGGCGCGGGUcc-CCggGCc -3'
miRNA:   3'- gaCGGUCa--UUGCGCCCAaaaGGaaCG- -5'
6390 5' -50.4 NC_001847.1 + 124600 0.7 0.933104
Target:  5'- -cGCCGGccgGGCGCGGGUcc-CCggGCc -3'
miRNA:   3'- gaCGGUCa--UUGCGCCCAaaaGGaaCG- -5'
6390 5' -50.4 NC_001847.1 + 130671 0.7 0.927688
Target:  5'- -cGCCAGgGACGCGGGgggcgCCgaggacGCg -3'
miRNA:   3'- gaCGGUCaUUGCGCCCaaaa-GGaa----CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.