Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6391 | 3' | -57 | NC_001847.1 | + | 113436 | 0.67 | 0.780136 |
Target: 5'- -cCUGCUGGcGC-UGGuccUCCGGCUCc -3' miRNA: 3'- uaGAUGACCaCGaACCu--GGGCCGAGc -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 96569 | 0.7 | 0.578152 |
Target: 5'- gGUCUGCUGGccgugUGCcUGGgcGCCCGGCg-- -3' miRNA: 3'- -UAGAUGACC-----ACGaACC--UGGGCCGagc -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 118411 | 0.69 | 0.650378 |
Target: 5'- cUCUGCUGGUGCUgcuguuuucgcUGGugaUCGuGCUCGu -3' miRNA: 3'- uAGAUGACCACGA-----------ACCug-GGC-CGAGC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 70669 | 0.69 | 0.660702 |
Target: 5'- cAUCUGCUGGgGCUggaggGGACCgCgGGCcCGg -3' miRNA: 3'- -UAGAUGACCaCGAa----CCUGG-G-CCGaGC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 14063 | 0.69 | 0.68127 |
Target: 5'- uUCgcgGCcGGUGCUUGGGCC--GCUCGu -3' miRNA: 3'- uAGa--UGaCCACGAACCUGGgcCGAGC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 99739 | 0.68 | 0.691497 |
Target: 5'- -gCUGCgcgGGUGCgUUGGccgGCCCGGCa-- -3' miRNA: 3'- uaGAUGa--CCACG-AACC---UGGGCCGagc -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 116362 | 0.67 | 0.75147 |
Target: 5'- ---aGCUGGUGUgcgUGGugCUGGCgCGc -3' miRNA: 3'- uagaUGACCACGa--ACCugGGCCGaGC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 51147 | 0.67 | 0.770703 |
Target: 5'- cUCUcGCUGGcGC-UGGACCCGuaCUCGa -3' miRNA: 3'- uAGA-UGACCaCGaACCUGGGCc-GAGC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 57775 | 0.67 | 0.780136 |
Target: 5'- -gCUGCUGGUGCUc--GCCgGGCUgGu -3' miRNA: 3'- uaGAUGACCACGAaccUGGgCCGAgC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 36296 | 0.7 | 0.578152 |
Target: 5'- gAUCUGCUGGUGCUgcGGAUgCGcCUCu -3' miRNA: 3'- -UAGAUGACCACGAa-CCUGgGCcGAGc -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 49888 | 0.71 | 0.55776 |
Target: 5'- -gCUGCUGcacggcacGUGC-UGGGCCCGGCcgCGg -3' miRNA: 3'- uaGAUGAC--------CACGaACCUGGGCCGa-GC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 120382 | 0.66 | 0.8049 |
Target: 5'- -cCUGCUuGUGCUUGaacggcgagcgcgaGGCCCGGCgcgCGu -3' miRNA: 3'- uaGAUGAcCACGAAC--------------CUGGGCCGa--GC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 128565 | 0.67 | 0.798585 |
Target: 5'- -cCUuCUGGUuccucuccaaGUUUGGGCCCGGCg-- -3' miRNA: 3'- uaGAuGACCA----------CGAACCUGGGCCGagc -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 111074 | 0.67 | 0.789433 |
Target: 5'- -gCUGCcgcGG-GCcUGGGCCCGGCUgCGc -3' miRNA: 3'- uaGAUGa--CCaCGaACCUGGGCCGA-GC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 10623 | 0.67 | 0.780136 |
Target: 5'- -cCUGCUGGcGC-UGGuccUCCGGCUCc -3' miRNA: 3'- uaGAUGACCaCGaACCu--GGGCCGAGc -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 43040 | 0.67 | 0.75147 |
Target: 5'- cAUCgacauauCUGG-GCUgaUGGGCCCGGaCUCu -3' miRNA: 3'- -UAGau-----GACCaCGA--ACCUGGGCC-GAGc -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 123449 | 0.68 | 0.731806 |
Target: 5'- gGUUUGCcGG-GCUUGG-CCCGGCgaCGg -3' miRNA: 3'- -UAGAUGaCCaCGAACCuGGGCCGa-GC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 12343 | 0.78 | 0.221524 |
Target: 5'- ---cGCUGGUGagcggUGGGCCUGGCUCGg -3' miRNA: 3'- uagaUGACCACga---ACCUGGGCCGAGC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 95807 | 1 | 0.007419 |
Target: 5'- -aUUACUGGUGCUUGGACCCGGCUCGg -3' miRNA: 3'- uaGAUGACCACGAACCUGGGCCGAGC- -5' |
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6391 | 3' | -57 | NC_001847.1 | + | 59553 | 0.66 | 0.825083 |
Target: 5'- ---gGCUGGUGC-UGGGCCUGGa--- -3' miRNA: 3'- uagaUGACCACGaACCUGGGCCgagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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