miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6392 3' -51.4 NC_001847.1 + 128799 0.66 0.984593
Target:  5'- cCGCGGCGCGGu--UG-CcGCCGgGGCa -3'
miRNA:   3'- -GCGUCGCGUUuauACaGuCGGCaCUG- -5'
6392 3' -51.4 NC_001847.1 + 116443 0.66 0.984593
Target:  5'- cCGCGGCGCuggcgGUGacgCGGgCCGUGcuGCg -3'
miRNA:   3'- -GCGUCGCGuuua-UACa--GUC-GGCAC--UG- -5'
6392 3' -51.4 NC_001847.1 + 3058 0.66 0.984593
Target:  5'- cCGCAgGCGCAGGUugugcucguaGUGcagCAGCgCGaUGACg -3'
miRNA:   3'- -GCGU-CGCGUUUA----------UACa--GUCG-GC-ACUG- -5'
6392 3' -51.4 NC_001847.1 + 50073 0.66 0.984593
Target:  5'- gCGCGGCGCGGAcccgGgcgCGGCCaaGGCu -3'
miRNA:   3'- -GCGUCGCGUUUaua-Ca--GUCGGcaCUG- -5'
6392 3' -51.4 NC_001847.1 + 71410 0.66 0.984593
Target:  5'- gGCGGCGCugu--UGcUCGGCCGggggGAg -3'
miRNA:   3'- gCGUCGCGuuuauAC-AGUCGGCa---CUg -5'
6392 3' -51.4 NC_001847.1 + 86775 0.66 0.984593
Target:  5'- gGCGGCGCca------CGGUCGUGACg -3'
miRNA:   3'- gCGUCGCGuuuauacaGUCGGCACUG- -5'
6392 3' -51.4 NC_001847.1 + 96023 0.66 0.984593
Target:  5'- gCGCGGCGC------GUCGGCCGccGCg -3'
miRNA:   3'- -GCGUCGCGuuuauaCAGUCGGCacUG- -5'
6392 3' -51.4 NC_001847.1 + 89293 0.66 0.984593
Target:  5'- cCGCGGC-CGAGgcc-UCGGCCGUGcCg -3'
miRNA:   3'- -GCGUCGcGUUUauacAGUCGGCACuG- -5'
6392 3' -51.4 NC_001847.1 + 74443 0.66 0.984214
Target:  5'- gGCGGCGCAcgac-----GCCGUGGCg -3'
miRNA:   3'- gCGUCGCGUuuauacaguCGGCACUG- -5'
6392 3' -51.4 NC_001847.1 + 110569 0.66 0.982625
Target:  5'- aCGgGGCGCA--UAUG-CGGCCGguuguacaauUGGCa -3'
miRNA:   3'- -GCgUCGCGUuuAUACaGUCGGC----------ACUG- -5'
6392 3' -51.4 NC_001847.1 + 31751 0.66 0.982625
Target:  5'- aGCGGCGCGug---GUCAG-CGUGcACc -3'
miRNA:   3'- gCGUCGCGUuuauaCAGUCgGCAC-UG- -5'
6392 3' -51.4 NC_001847.1 + 24388 0.66 0.982625
Target:  5'- -aUAGCGUugacAAAaAUGgCGGCCGUGGCg -3'
miRNA:   3'- gcGUCGCG----UUUaUACaGUCGGCACUG- -5'
6392 3' -51.4 NC_001847.1 + 49929 0.66 0.982625
Target:  5'- gCGCGuGCGCAcgu-UGgacGCCGUGGCg -3'
miRNA:   3'- -GCGU-CGCGUuuauACaguCGGCACUG- -5'
6392 3' -51.4 NC_001847.1 + 85256 0.66 0.982625
Target:  5'- aGguGCGCGAGguagGUGgccgCGGCCaaGACc -3'
miRNA:   3'- gCguCGCGUUUa---UACa---GUCGGcaCUG- -5'
6392 3' -51.4 NC_001847.1 + 92263 0.66 0.982625
Target:  5'- gCGCucuuGGCGCGGAgcuUGUCGGCCa---- -3'
miRNA:   3'- -GCG----UCGCGUUUau-ACAGUCGGcacug -5'
6392 3' -51.4 NC_001847.1 + 64941 0.66 0.982625
Target:  5'- aGCAcGCGCAGcagcugGUCcGCCGUGcCg -3'
miRNA:   3'- gCGU-CGCGUUuaua--CAGuCGGCACuG- -5'
6392 3' -51.4 NC_001847.1 + 7756 0.66 0.982625
Target:  5'- aCGgGGCGCA--UAUG-CGGCCGguuguacaauUGGCa -3'
miRNA:   3'- -GCgUCGCGUuuAUACaGUCGGC----------ACUG- -5'
6392 3' -51.4 NC_001847.1 + 133007 0.66 0.981357
Target:  5'- gCGCAGCGCAAAccUGguagacgcacuggccUCGGCCGa--- -3'
miRNA:   3'- -GCGUCGCGUUUauAC---------------AGUCGGCacug -5'
6392 3' -51.4 NC_001847.1 + 33702 0.66 0.980474
Target:  5'- uCGCGGCGCGg------CGGCgCGUGGCc -3'
miRNA:   3'- -GCGUCGCGUuuauacaGUCG-GCACUG- -5'
6392 3' -51.4 NC_001847.1 + 18428 0.66 0.980474
Target:  5'- aGCGcGCGCGGGUAUGcCAGCaucuCGUacgcGACg -3'
miRNA:   3'- gCGU-CGCGUUUAUACaGUCG----GCA----CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.