miRNA display CGI


Results 1 - 20 of 988 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6392 5' -60.6 NC_001847.1 + 127195 0.66 0.722721
Target:  5'- --cCCGCauGGCGCGaacUCcgGCGCGgcgCGCGCg -3'
miRNA:   3'- gacGGCG--UCGUGC---AG--CGCGCa--GCGCG- -5'
6392 5' -60.6 NC_001847.1 + 62897 0.66 0.722721
Target:  5'- -gGgUGCAGCGgGUgGCGCGg-GUGCu -3'
miRNA:   3'- gaCgGCGUCGUgCAgCGCGCagCGCG- -5'
6392 5' -60.6 NC_001847.1 + 129078 0.66 0.719832
Target:  5'- -cGCCGUugacgcuuuuuuucGGCACGU-GCGCG-CGCa- -3'
miRNA:   3'- gaCGGCG--------------UCGUGCAgCGCGCaGCGcg -5'
6392 5' -60.6 NC_001847.1 + 71027 0.66 0.713066
Target:  5'- -gGCCGC-GCACG-CGUcugGCGcCGCGg -3'
miRNA:   3'- gaCGGCGuCGUGCaGCG---CGCaGCGCg -5'
6392 5' -60.6 NC_001847.1 + 128164 0.66 0.713066
Target:  5'- uCUGCUggGCGGCcCGcCGgGCGgaaGCGCc -3'
miRNA:   3'- -GACGG--CGUCGuGCaGCgCGCag-CGCG- -5'
6392 5' -60.6 NC_001847.1 + 116717 0.66 0.713066
Target:  5'- -gGCCGCGgcGCACGUggccaaggcccUGCaCGcCGCGCu -3'
miRNA:   3'- gaCGGCGU--CGUGCA-----------GCGcGCaGCGCG- -5'
6392 5' -60.6 NC_001847.1 + 116396 0.66 0.713066
Target:  5'- -aGCCGCGGCgGCGgCGCucugggccccGgGcCGCGCg -3'
miRNA:   3'- gaCGGCGUCG-UGCaGCG----------CgCaGCGCG- -5'
6392 5' -60.6 NC_001847.1 + 53929 0.66 0.713066
Target:  5'- gCUGCCGCcgAGCcugcaucuACG-CGCGCGccggcUgGCGCc -3'
miRNA:   3'- -GACGGCG--UCG--------UGCaGCGCGC-----AgCGCG- -5'
6392 5' -60.6 NC_001847.1 + 38500 0.66 0.713066
Target:  5'- -cGCCGgGGgGCGgCGCG-GUCGCcgGCg -3'
miRNA:   3'- gaCGGCgUCgUGCaGCGCgCAGCG--CG- -5'
6392 5' -60.6 NC_001847.1 + 78046 0.66 0.722721
Target:  5'- -cGCgGCGGCGCGgcgguccaGCGCa--GCGCu -3'
miRNA:   3'- gaCGgCGUCGUGCag------CGCGcagCGCG- -5'
6392 5' -60.6 NC_001847.1 + 79381 0.66 0.722721
Target:  5'- -aGcCCGUacucagGGCACGgcCGCGCGg-GCGCg -3'
miRNA:   3'- gaC-GGCG------UCGUGCa-GCGCGCagCGCG- -5'
6392 5' -60.6 NC_001847.1 + 80858 0.66 0.722721
Target:  5'- -gGUCGUAGCACG-CGCGgaugaGCGCc -3'
miRNA:   3'- gaCGGCGUCGUGCaGCGCgcag-CGCG- -5'
6392 5' -60.6 NC_001847.1 + 24382 0.66 0.722721
Target:  5'- --cCCGCauGGCGCGaacUCcgGCGCGgcgCGCGCg -3'
miRNA:   3'- gacGGCG--UCGUGC---AG--CGCGCa--GCGCG- -5'
6392 5' -60.6 NC_001847.1 + 124008 0.66 0.722721
Target:  5'- -cGCCGCAGCucCGcCGCGUccaagaagccGUCcuccaGCGCc -3'
miRNA:   3'- gaCGGCGUCGu-GCaGCGCG----------CAG-----CGCG- -5'
6392 5' -60.6 NC_001847.1 + 113016 0.66 0.722721
Target:  5'- -cGCUcCAGCACGccgcCGCGCGUCugggaCGCc -3'
miRNA:   3'- gaCGGcGUCGUGCa---GCGCGCAGc----GCG- -5'
6392 5' -60.6 NC_001847.1 + 57588 0.66 0.722721
Target:  5'- -gGCCGCGgaaagcGCACGagggUGCGCcacgcccUCGCGCu -3'
miRNA:   3'- gaCGGCGU------CGUGCa---GCGCGc------AGCGCG- -5'
6392 5' -60.6 NC_001847.1 + 52405 0.66 0.722721
Target:  5'- -cGCUcCAGCGCGggCG-GCG-CGCGCu -3'
miRNA:   3'- gaCGGcGUCGUGCa-GCgCGCaGCGCG- -5'
6392 5' -60.6 NC_001847.1 + 131755 0.66 0.722721
Target:  5'- gCUGCuUGCGGaggGCuUUGCGCGgcucggCGCGCg -3'
miRNA:   3'- -GACG-GCGUCg--UGcAGCGCGCa-----GCGCG- -5'
6392 5' -60.6 NC_001847.1 + 124261 0.66 0.722721
Target:  5'- gCUGCCGCAG-GCGgucugccUGgGCGccCGCGCc -3'
miRNA:   3'- -GACGGCGUCgUGCa------GCgCGCa-GCGCG- -5'
6392 5' -60.6 NC_001847.1 + 96815 0.66 0.722721
Target:  5'- -gGCgCGCAGCgGCGgcgacCGCGCGg-GCGUu -3'
miRNA:   3'- gaCG-GCGUCG-UGCa----GCGCGCagCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.