miRNA display CGI


Results 1 - 20 of 1193 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6393 3' -62.9 NC_001847.1 + 69011 0.65 0.617255
Target:  5'- cGUGCGCCuccucgaGCaaGUccaggcggaaagaGGCCAUgCACGGCGa -3'
miRNA:   3'- -CGCGCGG-------CGagCG-------------CCGGUA-GUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 124988 0.65 0.615299
Target:  5'- cGCGCGucgaaaaagcccucCCGCUCGCgcuacGGCCGggcccgcUCGCcGCGa -3'
miRNA:   3'- -CGCGC--------------GGCGAGCG-----CCGGU-------AGUGcCGC- -5'
6393 3' -62.9 NC_001847.1 + 133086 0.66 0.613344
Target:  5'- uUGCGCCuGCgcaccaaagacccuaUCGUGGCCAcggC-CGGCGc -3'
miRNA:   3'- cGCGCGG-CG---------------AGCGCCGGUa--GuGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 100999 0.66 0.613344
Target:  5'- -gGUGCCGC-CGCGGCggcaguuacugccgcCGcCGCGGCc -3'
miRNA:   3'- cgCGCGGCGaGCGCCG---------------GUaGUGCCGc -5'
6393 3' -62.9 NC_001847.1 + 71169 0.66 0.609435
Target:  5'- -aGCGCCGCgaacagggugUCGCGcagcGCCggCGcCGGCGc -3'
miRNA:   3'- cgCGCGGCG----------AGCGC----CGGuaGU-GCCGC- -5'
6393 3' -62.9 NC_001847.1 + 76496 0.66 0.609435
Target:  5'- uGCaGCGCCugggagcccguGUUCGCGGCCuacgucccCGCgGGCGc -3'
miRNA:   3'- -CG-CGCGG-----------CGAGCGCCGGua------GUG-CCGC- -5'
6393 3' -62.9 NC_001847.1 + 37252 0.66 0.609435
Target:  5'- gGCGCGCUGUUCGCcauccgcgccGCCGaCugGGaCGc -3'
miRNA:   3'- -CGCGCGGCGAGCGc---------CGGUaGugCC-GC- -5'
6393 3' -62.9 NC_001847.1 + 24713 0.66 0.609435
Target:  5'- cGCGCuccaGUCGCUCGUacucGGCCGUaaaGGCc -3'
miRNA:   3'- -CGCG----CGGCGAGCG----CCGGUAgugCCGc -5'
6393 3' -62.9 NC_001847.1 + 55469 0.66 0.609435
Target:  5'- cGCGCGCCGCgcuagcCGCuGCCcugCuaugGGCGa -3'
miRNA:   3'- -CGCGCGGCGa-----GCGcCGGua-Gug--CCGC- -5'
6393 3' -62.9 NC_001847.1 + 59734 0.66 0.609435
Target:  5'- aCGUGUgGCcCGCGaugcccGCC-UCGCGGCGg -3'
miRNA:   3'- cGCGCGgCGaGCGC------CGGuAGUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 134660 0.66 0.609435
Target:  5'- -gGCGCgGaggCGCGGgcacCCAUgACGGCGc -3'
miRNA:   3'- cgCGCGgCga-GCGCC----GGUAgUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 16672 0.66 0.609435
Target:  5'- gGCGCGUCGCgcaGCcuuGGCUG-CGCgGGCGa -3'
miRNA:   3'- -CGCGCGGCGag-CG---CCGGUaGUG-CCGC- -5'
6393 3' -62.9 NC_001847.1 + 67937 0.66 0.609435
Target:  5'- cGCGCGcCCGC-CGC--UCggCACGGCGu -3'
miRNA:   3'- -CGCGC-GGCGaGCGccGGuaGUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 105343 0.66 0.609435
Target:  5'- uGgGCGCCggggcGCUCGCGuCCAcaaACGGCc -3'
miRNA:   3'- -CgCGCGG-----CGAGCGCcGGUag-UGCCGc -5'
6393 3' -62.9 NC_001847.1 + 105615 0.66 0.609435
Target:  5'- aGCGC-CCGCgccgCGCGGgCGagcUCuGCGGCc -3'
miRNA:   3'- -CGCGcGGCGa---GCGCCgGU---AG-UGCCGc -5'
6393 3' -62.9 NC_001847.1 + 116427 0.66 0.609435
Target:  5'- cGCGCGCUuggGCUCGagGGCgGUgggCGCuGGCGc -3'
miRNA:   3'- -CGCGCGG---CGAGCg-CCGgUA---GUG-CCGC- -5'
6393 3' -62.9 NC_001847.1 + 128993 0.66 0.609435
Target:  5'- uGCGCGCCGUcacCGCcaccgaGCCccccgAUgGCGGCGa -3'
miRNA:   3'- -CGCGCGGCGa--GCGc-----CGG-----UAgUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 91437 0.66 0.609435
Target:  5'- cGCGCGCaGCgCGCGcaaagcacGCCAgugCGcCGGCGu -3'
miRNA:   3'- -CGCGCGgCGaGCGC--------CGGUa--GU-GCCGC- -5'
6393 3' -62.9 NC_001847.1 + 108769 0.66 0.609435
Target:  5'- uGgGCGCCGgaCGC-GCCGg-GCGGCc -3'
miRNA:   3'- -CgCGCGGCgaGCGcCGGUagUGCCGc -5'
6393 3' -62.9 NC_001847.1 + 72992 0.66 0.609435
Target:  5'- cGCGCgggagcugGCCGCagCGCGGgcgcggaaCCAggcCGCGGCa -3'
miRNA:   3'- -CGCG--------CGGCGa-GCGCC--------GGUa--GUGCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.