miRNA display CGI

Results 1 - 20 of 1193 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6393	3'	-62.9	NC_001847.1	+	69011	0.65	0.617255
	Target:  5'- cGUGCGCCuccucgaGCaaGUccaggcggaaagaGGCCAUgCACGGCGa -3' miRNA:   3'- -CGCGCGG-------CGagCG-------------CCGGUA-GUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	124988	0.65	0.615299
	Target:  5'- cGCGCGucgaaaaagcccucCCGCUCGCgcuacGGCCGggcccgcUCGCcGCGa -3' miRNA:   3'- -CGCGC--------------GGCGAGCG-----CCGGU-------AGUGcCGC- -5'
6393	3'	-62.9	NC_001847.1	+	133086	0.66	0.613344
	Target:  5'- uUGCGCCuGCgcaccaaagacccuaUCGUGGCCAcggC-CGGCGc -3' miRNA:   3'- cGCGCGG-CG---------------AGCGCCGGUa--GuGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	100999	0.66	0.613344
	Target:  5'- -gGUGCCGC-CGCGGCggcaguuacugccgcCGcCGCGGCc -3' miRNA:   3'- cgCGCGGCGaGCGCCG---------------GUaGUGCCGc -5'
6393	3'	-62.9	NC_001847.1	+	76496	0.66	0.609435
	Target:  5'- uGCaGCGCCugggagcccguGUUCGCGGCCuacgucccCGCgGGCGc -3' miRNA:   3'- -CG-CGCGG-----------CGAGCGCCGGua------GUG-CCGC- -5'
6393	3'	-62.9	NC_001847.1	+	55469	0.66	0.609435
	Target:  5'- cGCGCGCCGCgcuagcCGCuGCCcugCuaugGGCGa -3' miRNA:   3'- -CGCGCGGCGa-----GCGcCGGua-Gug--CCGC- -5'
6393	3'	-62.9	NC_001847.1	+	59734	0.66	0.609435
	Target:  5'- aCGUGUgGCcCGCGaugcccGCC-UCGCGGCGg -3' miRNA:   3'- cGCGCGgCGaGCGC------CGGuAGUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	25204	0.66	0.609435
	Target:  5'- -aGCcCCGCgCGCGGCCggCAaagagcaugauCGGCGu -3' miRNA:   3'- cgCGcGGCGaGCGCCGGuaGU-----------GCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	37252	0.66	0.609435
	Target:  5'- gGCGCGCUGUUCGCcauccgcgccGCCGaCugGGaCGc -3' miRNA:   3'- -CGCGCGGCGAGCGc---------CGGUaGugCC-GC- -5'
6393	3'	-62.9	NC_001847.1	+	24713	0.66	0.609435
	Target:  5'- cGCGCuccaGUCGCUCGUacucGGCCGUaaaGGCc -3' miRNA:   3'- -CGCG----CGGCGAGCG----CCGGUAgugCCGc -5'
6393	3'	-62.9	NC_001847.1	+	71169	0.66	0.609435
	Target:  5'- -aGCGCCGCgaacagggugUCGCGcagcGCCggCGcCGGCGc -3' miRNA:   3'- cgCGCGGCG----------AGCGC----CGGuaGU-GCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	134660	0.66	0.609435
	Target:  5'- -gGCGCgGaggCGCGGgcacCCAUgACGGCGc -3' miRNA:   3'- cgCGCGgCga-GCGCC----GGUAgUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	16672	0.66	0.609435
	Target:  5'- gGCGCGUCGCgcaGCcuuGGCUG-CGCgGGCGa -3' miRNA:   3'- -CGCGCGGCGag-CG---CCGGUaGUG-CCGC- -5'
6393	3'	-62.9	NC_001847.1	+	67937	0.66	0.609435
	Target:  5'- cGCGCGcCCGC-CGC--UCggCACGGCGu -3' miRNA:   3'- -CGCGC-GGCGaGCGccGGuaGUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	105343	0.66	0.609435
	Target:  5'- uGgGCGCCggggcGCUCGCGuCCAcaaACGGCc -3' miRNA:   3'- -CgCGCGG-----CGAGCGCcGGUag-UGCCGc -5'
6393	3'	-62.9	NC_001847.1	+	105615	0.66	0.609435
	Target:  5'- aGCGC-CCGCgccgCGCGGgCGagcUCuGCGGCc -3' miRNA:   3'- -CGCGcGGCGa---GCGCCgGU---AG-UGCCGc -5'
6393	3'	-62.9	NC_001847.1	+	116427	0.66	0.609435
	Target:  5'- cGCGCGCUuggGCUCGagGGCgGUgggCGCuGGCGc -3' miRNA:   3'- -CGCGCGG---CGAGCg-CCGgUA---GUG-CCGC- -5'
6393	3'	-62.9	NC_001847.1	+	128993	0.66	0.609435
	Target:  5'- uGCGCGCCGUcacCGCcaccgaGCCccccgAUgGCGGCGa -3' miRNA:   3'- -CGCGCGGCGa--GCGc-----CGG-----UAgUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	91437	0.66	0.609435
	Target:  5'- cGCGCGCaGCgCGCGcaaagcacGCCAgugCGcCGGCGu -3' miRNA:   3'- -CGCGCGgCGaGCGC--------CGGUa--GU-GCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	108769	0.66	0.609435
	Target:  5'- uGgGCGCCGgaCGC-GCCGg-GCGGCc -3' miRNA:   3'- -CgCGCGGCgaGCGcCGGUagUGCCGc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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