miRNA display CGI

Results 1 - 20 of 1193 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6393	3'	-62.9	NC_001847.1	+	93517	1.1	0.000561
	Target:  5'- gGCGCGCCGCUCGCGGCCAUCACGGCGg -3' miRNA:   3'- -CGCGCGGCGAGCGCCGGUAGUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	1591	0.91	0.012542
	Target:  5'- aGCGCGCCGCUCG-GGCCAgcgCGCGGCGc -3' miRNA:   3'- -CGCGCGGCGAGCgCCGGUa--GUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	104404	0.91	0.012542
	Target:  5'- aGCGCGCCGCUCG-GGCCAgcgCGCGGCGc -3' miRNA:   3'- -CGCGCGGCGAGCgCCGGUa--GUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	33675	0.9	0.016334
	Target:  5'- aGCGCGCCGCccUUGCGGCCG-CGCGGCGg -3' miRNA:   3'- -CGCGCGGCG--AGCGCCGGUaGUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	107151	0.86	0.03236
	Target:  5'- cGCGCGCUGCagCGCGGCCcagCGCGGCGc -3' miRNA:   3'- -CGCGCGGCGa-GCGCCGGua-GUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	59359	0.85	0.035001
	Target:  5'- cGCGCGCCGCgccgagccCGCGGCCGUguucacccgCGCGGCGg -3' miRNA:   3'- -CGCGCGGCGa-------GCGCCGGUA---------GUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	131865	0.85	0.036879
	Target:  5'- uGCGCGCCguGCUCGcCGGCCG-CGCGGCGc -3' miRNA:   3'- -CGCGCGG--CGAGC-GCCGGUaGUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	29052	0.85	0.036879
	Target:  5'- uGCGCGCCguGCUCGcCGGCCG-CGCGGCGc -3' miRNA:   3'- -CGCGCGG--CGAGC-GCCGGUaGUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	122330	0.85	0.037854
	Target:  5'- aGCGCGCCGCUCGCGcGCCAcgcgcugaucgUugGGCGg -3' miRNA:   3'- -CGCGCGGCGAGCGC-CGGUa----------GugCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	45217	0.84	0.040935
	Target:  5'- aGCGcCGCCGCgagCGCGGCCucgCGCGGCa -3' miRNA:   3'- -CGC-GCGGCGa--GCGCCGGua-GUGCCGc -5'
6393	3'	-62.9	NC_001847.1	+	18755	0.84	0.04426
	Target:  5'- aGCGcCGCCGC-CGCGGCUAagGCGGCGg -3' miRNA:   3'- -CGC-GCGGCGaGCGCCGGUagUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	43526	0.84	0.045426
	Target:  5'- cGCGCGCgGgcuucCUCGCGGCCAaCACGGCGc -3' miRNA:   3'- -CGCGCGgC-----GAGCGCCGGUaGUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	105743	0.83	0.046622
	Target:  5'- cCGCGCCGCcagCGCGGCCGccuccagCGCGGCGg -3' miRNA:   3'- cGCGCGGCGa--GCGCCGGUa------GUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	2930	0.83	0.046622
	Target:  5'- cCGCGCCGCcagCGCGGCCGccuccagCGCGGCGg -3' miRNA:   3'- cGCGCGGCGa--GCGCCGGUa------GUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	29470	0.83	0.047849
	Target:  5'- -aGCGCCGCcCGCGGCCGagGCGGCa -3' miRNA:   3'- cgCGCGGCGaGCGCCGGUagUGCCGc -5'
6393	3'	-62.9	NC_001847.1	+	121779	0.83	0.049107
	Target:  5'- uGCGCGCCGUUCGCGGCUGgagcguccUCGCgGGCGc -3' miRNA:   3'- -CGCGCGGCGAGCGCCGGU--------AGUG-CCGC- -5'
6393	3'	-62.9	NC_001847.1	+	84670	0.83	0.05172
	Target:  5'- aGCGCGCCGCUUGCuGUCG-CGCGGCGc -3' miRNA:   3'- -CGCGCGGCGAGCGcCGGUaGUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	35938	0.82	0.055896
	Target:  5'- gGCGCGCCGCcgCGCGGCCGccUCGC-GCGa -3' miRNA:   3'- -CGCGCGGCGa-GCGCCGGU--AGUGcCGC- -5'
6393	3'	-62.9	NC_001847.1	+	38053	0.82	0.058859
	Target:  5'- cCGCGCCGC-CGCGGCUAagcugcgCGCGGCGg -3' miRNA:   3'- cGCGCGGCGaGCGCCGGUa------GUGCCGC- -5'
6393	3'	-62.9	NC_001847.1	+	14648	0.82	0.061975
	Target:  5'- cGCGCGCCGCUCGCugcgagcggGGCgCGUguCGGCGu -3' miRNA:   3'- -CGCGCGGCGAGCG---------CCG-GUAguGCCGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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