miRNA display CGI


Results 1 - 20 of 1193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6393 3' -62.9 NC_001847.1 + 104404 0.91 0.012542
Target:  5'- aGCGCGCCGCUCG-GGCCAgcgCGCGGCGc -3'
miRNA:   3'- -CGCGCGGCGAGCgCCGGUa--GUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 24190 0.8 0.086452
Target:  5'- aGCGUGgCGCUgGUGGCCAUgACGGCc -3'
miRNA:   3'- -CGCGCgGCGAgCGCCGGUAgUGCCGc -5'
6393 3' -62.9 NC_001847.1 + 33654 0.79 0.088677
Target:  5'- cGCGCGCgCGCguggcCGCGGCCcgCGCGGgGc -3'
miRNA:   3'- -CGCGCG-GCGa----GCGCCGGuaGUGCCgC- -5'
6393 3' -62.9 NC_001847.1 + 100999 0.66 0.613344
Target:  5'- -gGUGCCGC-CGCGGCggcaguuacugccgcCGcCGCGGCc -3'
miRNA:   3'- cgCGCGGCGaGCGCCG---------------GUaGUGCCGc -5'
6393 3' -62.9 NC_001847.1 + 105743 0.83 0.046622
Target:  5'- cCGCGCCGCcagCGCGGCCGccuccagCGCGGCGg -3'
miRNA:   3'- cGCGCGGCGa--GCGCCGGUa------GUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 29470 0.83 0.047849
Target:  5'- -aGCGCCGCcCGCGGCCGagGCGGCa -3'
miRNA:   3'- cgCGCGGCGaGCGCCGGUagUGCCGc -5'
6393 3' -62.9 NC_001847.1 + 84670 0.83 0.05172
Target:  5'- aGCGCGCCGCUUGCuGUCG-CGCGGCGc -3'
miRNA:   3'- -CGCGCGGCGAGCGcCGGUaGUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 35938 0.82 0.055896
Target:  5'- gGCGCGCCGCcgCGCGGCCGccUCGC-GCGa -3'
miRNA:   3'- -CGCGCGGCGa-GCGCCGGU--AGUGcCGC- -5'
6393 3' -62.9 NC_001847.1 + 34286 0.81 0.066949
Target:  5'- uGgGCGCCGCgcUCGCGGCCGUCAgcgaGGCu -3'
miRNA:   3'- -CgCGCGGCG--AGCGCCGGUAGUg---CCGc -5'
6393 3' -62.9 NC_001847.1 + 130769 0.8 0.084281
Target:  5'- gGCGCGCgCGCUCGCGGUC---GCGGUGg -3'
miRNA:   3'- -CGCGCG-GCGAGCGCCGGuagUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 34775 0.81 0.072306
Target:  5'- uGCGCGCCGCggcCGCGGCg--CGCGGCu -3'
miRNA:   3'- -CGCGCGGCGa--GCGCCGguaGUGCCGc -5'
6393 3' -62.9 NC_001847.1 + 99466 0.82 0.063592
Target:  5'- aGCGCGCCGCUCGgGGCCAagaUCAgcGCGa -3'
miRNA:   3'- -CGCGCGGCGAGCgCCGGU---AGUgcCGC- -5'
6393 3' -62.9 NC_001847.1 + 131865 0.85 0.036879
Target:  5'- uGCGCGCCguGCUCGcCGGCCG-CGCGGCGc -3'
miRNA:   3'- -CGCGCGG--CGAGC-GCCGGUaGUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 106032 0.81 0.072306
Target:  5'- cGCGCaGCCGCUCGCGcGCCGcccgcgccgugcUCGcCGGCGg -3'
miRNA:   3'- -CGCG-CGGCGAGCGC-CGGU------------AGU-GCCGC- -5'
6393 3' -62.9 NC_001847.1 + 18755 0.84 0.04426
Target:  5'- aGCGcCGCCGC-CGCGGCUAagGCGGCGg -3'
miRNA:   3'- -CGC-GCGGCGaGCGCCGGUagUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 28328 0.82 0.061975
Target:  5'- uGCGUGCCGCUCGcCGGCgGgcagCGCGGCc -3'
miRNA:   3'- -CGCGCGGCGAGC-GCCGgUa---GUGCCGc -5'
6393 3' -62.9 NC_001847.1 + 120211 0.8 0.078074
Target:  5'- gGCGC-CCGCUCGCaGCCuuguguAUCGCGGCGa -3'
miRNA:   3'- -CGCGcGGCGAGCGcCGG------UAGUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 61326 0.79 0.088677
Target:  5'- cGCGCaGCCGCUgcagCGCGGCgAcCACGGCGu -3'
miRNA:   3'- -CGCG-CGGCGA----GCGCCGgUaGUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 43526 0.84 0.045426
Target:  5'- cGCGCGCgGgcuucCUCGCGGCCAaCACGGCGc -3'
miRNA:   3'- -CGCGCGgC-----GAGCGCCGGUaGUGCCGC- -5'
6393 3' -62.9 NC_001847.1 + 121779 0.83 0.049107
Target:  5'- uGCGCGCCGUUCGCGGCUGgagcguccUCGCgGGCGc -3'
miRNA:   3'- -CGCGCGGCGAGCGCCGGU--------AGUG-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.