miRNA display CGI


Results 1 - 20 of 403 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6393 5' -57.2 NC_001847.1 + 113367 0.66 0.832124
Target:  5'- cGCGCCcggccgGCGCcgGGCC-CGGCGCc--- -3'
miRNA:   3'- uUGCGG------UGCGa-CCGGaGCUGCGuuuc -5'
6393 5' -57.2 NC_001847.1 + 111829 0.66 0.823601
Target:  5'- gGACGUgGCGC-GGCUcagCGGCGCcGAGc -3'
miRNA:   3'- -UUGCGgUGCGaCCGGa--GCUGCGuUUC- -5'
6393 5' -57.2 NC_001847.1 + 105710 0.66 0.823601
Target:  5'- cGGCGCCACGCcccaGCgCUCGcugGCGCGcAGg -3'
miRNA:   3'- -UUGCGGUGCGac--CG-GAGC---UGCGUuUC- -5'
6393 5' -57.2 NC_001847.1 + 88551 0.66 0.823601
Target:  5'- cGAgGCCGCGCcggcggGGCUgacgccCGGCGCGGAc -3'
miRNA:   3'- -UUgCGGUGCGa-----CCGGa-----GCUGCGUUUc -5'
6393 5' -57.2 NC_001847.1 + 75196 0.66 0.823601
Target:  5'- cGACGCCACGCcGGaCgcuugCGugGCGc-- -3'
miRNA:   3'- -UUGCGGUGCGaCCgGa----GCugCGUuuc -5'
6393 5' -57.2 NC_001847.1 + 73683 0.66 0.823601
Target:  5'- cGCGCCaucgaugaagGCGC-GGCC-CGGCGCGu-- -3'
miRNA:   3'- uUGCGG----------UGCGaCCGGaGCUGCGUuuc -5'
6393 5' -57.2 NC_001847.1 + 31440 0.66 0.823601
Target:  5'- cGGCgGCCGCgGC-GGCCcCGGCGCGGGc -3'
miRNA:   3'- -UUG-CGGUG-CGaCCGGaGCUGCGUUUc -5'
6393 5' -57.2 NC_001847.1 + 68836 0.66 0.823601
Target:  5'- gGGCGCCGCGaaGaGCUcgGGCGCGAGGc -3'
miRNA:   3'- -UUGCGGUGCgaC-CGGagCUGCGUUUC- -5'
6393 5' -57.2 NC_001847.1 + 60499 0.66 0.823601
Target:  5'- aGGCGCaGCaGCUGccccGCCUCG-CGCGAGGc -3'
miRNA:   3'- -UUGCGgUG-CGAC----CGGAGCuGCGUUUC- -5'
6393 5' -57.2 NC_001847.1 + 103533 0.66 0.827032
Target:  5'- cGCGCCcgcccaccgggacucGgGCUGGCCacaCGcGCGCAGAGc -3'
miRNA:   3'- uUGCGG---------------UgCGACCGGa--GC-UGCGUUUC- -5'
6393 5' -57.2 NC_001847.1 + 13649 0.66 0.832124
Target:  5'- --aGCuCGCGCUGGuUCUCcGGCGCGGu- -3'
miRNA:   3'- uugCG-GUGCGACC-GGAG-CUGCGUUuc -5'
6393 5' -57.2 NC_001847.1 + 14395 0.66 0.832124
Target:  5'- -uCGCCGaGCUGGCgUCGAgGCc--- -3'
miRNA:   3'- uuGCGGUgCGACCGgAGCUgCGuuuc -5'
6393 5' -57.2 NC_001847.1 + 128116 0.66 0.832124
Target:  5'- cGACGUgGCGCUGGCgCUgGcggauGCGCGGc- -3'
miRNA:   3'- -UUGCGgUGCGACCG-GAgC-----UGCGUUuc -5'
6393 5' -57.2 NC_001847.1 + 10554 0.66 0.832124
Target:  5'- cGCGCCcggccgGCGCcgGGCC-CGGCGCc--- -3'
miRNA:   3'- uUGCGG------UGCGa-CCGGaGCUGCGuuuc -5'
6393 5' -57.2 NC_001847.1 + 8449 0.66 0.832124
Target:  5'- cGGCGCCgggucggaggcgGCGCcgGGCCgggggCGGCGCucGGc -3'
miRNA:   3'- -UUGCGG------------UGCGa-CCGGa----GCUGCGuuUC- -5'
6393 5' -57.2 NC_001847.1 + 74511 0.66 0.832124
Target:  5'- uGCGCCgcGCGCUGGacgaGACGCGGc- -3'
miRNA:   3'- uUGCGG--UGCGACCggagCUGCGUUuc -5'
6393 5' -57.2 NC_001847.1 + 71168 0.66 0.832124
Target:  5'- gAGCGCCGCGaacagGGUgUCG-CGCAGc- -3'
miRNA:   3'- -UUGCGGUGCga---CCGgAGCuGCGUUuc -5'
6393 5' -57.2 NC_001847.1 + 66674 0.66 0.832124
Target:  5'- uGCGcCCGCGCggcggGGCCcCGGcCGCGGGc -3'
miRNA:   3'- uUGC-GGUGCGa----CCGGaGCU-GCGUUUc -5'
6393 5' -57.2 NC_001847.1 + 45359 0.66 0.832124
Target:  5'- -uCGCCAgCGCgaugacGGCCUCGuACGCc--- -3'
miRNA:   3'- uuGCGGU-GCGa-----CCGGAGC-UGCGuuuc -5'
6393 5' -57.2 NC_001847.1 + 39326 0.66 0.832124
Target:  5'- --aGCCGCGCUGGUCgcggaccaCGAUGUuGGGc -3'
miRNA:   3'- uugCGGUGCGACCGGa-------GCUGCGuUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.