miRNA display CGI


Results 1 - 20 of 403 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6393 5' -57.2 NC_001847.1 + 11 0.69 0.617412
Target:  5'- cGCGCCGCGCgGGCCcccugCGACccCGGGGg -3'
miRNA:   3'- uUGCGGUGCGaCCGGa----GCUGc-GUUUC- -5'
6393 5' -57.2 NC_001847.1 + 1108 0.67 0.749734
Target:  5'- aGACGCCGCGUgccCCUgCGACGCuggcGAGa -3'
miRNA:   3'- -UUGCGGUGCGaccGGA-GCUGCGu---UUC- -5'
6393 5' -57.2 NC_001847.1 + 1513 0.77 0.23722
Target:  5'- --aGCCGCGCguaggcGGCCUCGGCGCGcgcgAAGg -3'
miRNA:   3'- uugCGGUGCGa-----CCGGAGCUGCGU----UUC- -5'
6393 5' -57.2 NC_001847.1 + 1562 0.68 0.730022
Target:  5'- cGCGCCGCGa-GGCCagcaCGGCGCGc-- -3'
miRNA:   3'- uUGCGGUGCgaCCGGa---GCUGCGUuuc -5'
6393 5' -57.2 NC_001847.1 + 1585 0.66 0.806029
Target:  5'- nGCGCCAgCGCgccgcucgGGCCagcgcgCGGCGCAc-- -3'
miRNA:   3'- uUGCGGU-GCGa-------CCGGa-----GCUGCGUuuc -5'
6393 5' -57.2 NC_001847.1 + 1728 0.71 0.525652
Target:  5'- -cCGCCGCGCcgcGGCCagcCGcGCGCAGAGg -3'
miRNA:   3'- uuGCGGUGCGa--CCGGa--GC-UGCGUUUC- -5'
6393 5' -57.2 NC_001847.1 + 2351 0.7 0.596755
Target:  5'- -cCGCCGCGCcGGCC-CGGcCGCGucGg -3'
miRNA:   3'- uuGCGGUGCGaCCGGaGCU-GCGUuuC- -5'
6393 5' -57.2 NC_001847.1 + 2954 0.67 0.749734
Target:  5'- cAGCGCgGCGgccGCCUCGGCGCGcAGc -3'
miRNA:   3'- -UUGCGgUGCgacCGGAGCUGCGUuUC- -5'
6393 5' -57.2 NC_001847.1 + 3178 0.68 0.689635
Target:  5'- cAGCGCCuCGCggcaGGCgaCGGCGCAGc- -3'
miRNA:   3'- -UUGCGGuGCGa---CCGgaGCUGCGUUuc -5'
6393 5' -57.2 NC_001847.1 + 3271 0.72 0.44869
Target:  5'- cGGCGCCGCGC-GGCCggcgagcaCGGCGCGcAGc -3'
miRNA:   3'- -UUGCGGUGCGaCCGGa-------GCUGCGUuUC- -5'
6393 5' -57.2 NC_001847.1 + 3427 0.67 0.778485
Target:  5'- cAugGCCACGCaGGCCgccacgugCGGCaGCGc-- -3'
miRNA:   3'- -UugCGGUGCGaCCGGa-------GCUG-CGUuuc -5'
6393 5' -57.2 NC_001847.1 + 3722 0.67 0.759436
Target:  5'- -uCGCgCGCGCcGGCCaCGGCGCGc-- -3'
miRNA:   3'- uuGCG-GUGCGaCCGGaGCUGCGUuuc -5'
6393 5' -57.2 NC_001847.1 + 3930 0.73 0.430427
Target:  5'- cGCGcCCGCGCUGGCgCcgCGGCGgGGGGg -3'
miRNA:   3'- uUGC-GGUGCGACCG-Ga-GCUGCgUUUC- -5'
6393 5' -57.2 NC_001847.1 + 4348 0.69 0.616378
Target:  5'- gGGCGCCA-GCUcGGCCUCGAUuacgucaGCAAu- -3'
miRNA:   3'- -UUGCGGUgCGA-CCGGAGCUG-------CGUUuc -5'
6393 5' -57.2 NC_001847.1 + 4392 0.66 0.806029
Target:  5'- cGGCGCCACGgUcGCCgccgUCGACGCc--- -3'
miRNA:   3'- -UUGCGGUGCgAcCGG----AGCUGCGuuuc -5'
6393 5' -57.2 NC_001847.1 + 4425 0.72 0.48645
Target:  5'- cGCGCCcucCGCccccucGGCCUCGGCGCAc-- -3'
miRNA:   3'- uUGCGGu--GCGa-----CCGGAGCUGCGUuuc -5'
6393 5' -57.2 NC_001847.1 + 4507 0.66 0.823601
Target:  5'- -uCGCCGaucucCGCgucuucGGCCUCGGCGCc--- -3'
miRNA:   3'- uuGCGGU-----GCGa-----CCGGAGCUGCGuuuc -5'
6393 5' -57.2 NC_001847.1 + 4605 0.71 0.505889
Target:  5'- -cCGCCACaGCUcGGCCagcUCGGCGCGGGc -3'
miRNA:   3'- uuGCGGUG-CGA-CCGG---AGCUGCGUUUc -5'
6393 5' -57.2 NC_001847.1 + 4752 0.68 0.688613
Target:  5'- --aGUCGCGCaaguagcggcucaUGGCCUCGGCG-AAGGg -3'
miRNA:   3'- uugCGGUGCG-------------ACCGGAGCUGCgUUUC- -5'
6393 5' -57.2 NC_001847.1 + 5880 0.66 0.823601
Target:  5'- cAGCGCUGCGCgcagggcGGCCgcgcCGuCGCAGAu -3'
miRNA:   3'- -UUGCGGUGCGa------CCGGa---GCuGCGUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.