Results 61 - 80 of 1045 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6394 | 3' | -68.6 | NC_001847.1 | + | 43474 | 0.66 | 0.385702 |
Target: 5'- gCCGCaGCCGCagCCGCagCCGCGagagaGG-GCGa -3' miRNA: 3'- gGGCG-CGGCG--GGCG--GGCGCg----CCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 2226 | 0.66 | 0.385702 |
Target: 5'- gCCaGCGCCGCggCGCUgGgCGCGG-GCGu -3' miRNA: 3'- gGG-CGCGGCGg-GCGGgC-GCGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 85913 | 0.66 | 0.381142 |
Target: 5'- gCCGCGUCGCagacguacacgaaGCCCGCGggcccCGGcGCGa -3' miRNA: 3'- gGGCGCGGCGgg-----------CGGGCGC-----GCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 116801 | 0.66 | 0.378121 |
Target: 5'- gCUGcCGCCgacgguaacgcGCCUGCagCCGCGCGuGUGCu -3' miRNA: 3'- gGGC-GCGG-----------CGGGCG--GGCGCGC-CACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 88696 | 0.66 | 0.378121 |
Target: 5'- aUCCGCGCgcgcauccccacCGCCgCGCCCGaggagGCuGUGCu -3' miRNA: 3'- -GGGCGCG------------GCGG-GCGGGCg----CGcCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 83705 | 0.66 | 0.378121 |
Target: 5'- -aUGuCGCCGUCCauGUCgCGCGCGG-GCGg -3' miRNA: 3'- ggGC-GCGGCGGG--CGG-GCGCGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 37078 | 0.66 | 0.378121 |
Target: 5'- -aCGCGgUacugGCCCGCCUgaGCGCGGagaGCGg -3' miRNA: 3'- ggGCGCgG----CGGGCGGG--CGCGCCa--CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 100870 | 0.66 | 0.378121 |
Target: 5'- -gCGCGgCGCCCagccGCCgCGCGcCGGUcuGCGc -3' miRNA: 3'- ggGCGCgGCGGG----CGG-GCGC-GCCA--CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 99064 | 0.66 | 0.378121 |
Target: 5'- cUCCGCcaGCCGCgCGUCCaGCGCGccUGUGa -3' miRNA: 3'- -GGGCG--CGGCGgGCGGG-CGCGCc-ACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 86083 | 0.66 | 0.378121 |
Target: 5'- gCUGcCGCCGCCCGCggCCGUGaGcUGCGc -3' miRNA: 3'- gGGC-GCGGCGGGCG--GGCGCgCcACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 19856 | 0.66 | 0.38494 |
Target: 5'- gCCCGCGCCcgggggcGCCggcuuaGCCCGCcaccgccaaccgGCGGaGUGg -3' miRNA: 3'- -GGGCGCGG-------CGGg-----CGGGCG------------CGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 42078 | 0.66 | 0.385702 |
Target: 5'- gCUGCGgCGCaUCGgCCuCGCGGUGCc -3' miRNA: 3'- gGGCGCgGCG-GGCgGGcGCGCCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 131291 | 0.66 | 0.385702 |
Target: 5'- cCCCgGCGCCGUCuaCGUCUgGgGCGGcGCGa -3' miRNA: 3'- -GGG-CGCGGCGG--GCGGG-CgCGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 74845 | 0.66 | 0.385702 |
Target: 5'- gCgCGCGCCGCCCGCC-GCccCGcUGCc -3' miRNA: 3'- -GgGCGCGGCGGGCGGgCGc-GCcACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 57685 | 0.66 | 0.385702 |
Target: 5'- gCCCgGCGcCCGCCCcaGCCCGC-CGacUGCu -3' miRNA: 3'- -GGG-CGC-GGCGGG--CGGGCGcGCc-ACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 53179 | 0.66 | 0.385702 |
Target: 5'- gCCCGCGUgaugaGCgCGCCC--GCGGUGUu -3' miRNA: 3'- -GGGCGCGg----CGgGCGGGcgCGCCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 29968 | 0.66 | 0.385702 |
Target: 5'- gCCGcCGCCGCCgacgcggccggGCCgGCGCGGcGgGa -3' miRNA: 3'- gGGC-GCGGCGGg----------CGGgCGCGCCaCgC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 128167 | 0.66 | 0.385702 |
Target: 5'- gCUGgGCgGCCCGCCgG-GCGGaaGCGc -3' miRNA: 3'- gGGCgCGgCGGGCGGgCgCGCCa-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 70122 | 0.66 | 0.385702 |
Target: 5'- gCCaCGUGgCGCUCGCgCCGCuuGCGGUccGCu -3' miRNA: 3'- -GG-GCGCgGCGGGCG-GGCG--CGCCA--CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 44098 | 0.66 | 0.385702 |
Target: 5'- gUCUGCGCC-CgCCGCCUGCGCgcaagaugagccGGUuGCu -3' miRNA: 3'- -GGGCGCGGcG-GGCGGGCGCG------------CCA-CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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