miRNA display CGI


Results 81 - 100 of 1045 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 1943 0.66 0.378121
Target:  5'- aCUCGgGCCGCCgGCgcucguccucgCCGgGCGGcGCc -3'
miRNA:   3'- -GGGCgCGGCGGgCG-----------GGCgCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 135137 0.66 0.378121
Target:  5'- uCUC-CG-CGCCC-CCCGCGCGGggGCu -3'
miRNA:   3'- -GGGcGCgGCGGGcGGGCGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 54102 0.66 0.378121
Target:  5'- gCCCaCGUCGCCCccgcaGUCCGCGgCGGcgucgcccaUGCGc -3'
miRNA:   3'- -GGGcGCGGCGGG-----CGGGCGC-GCC---------ACGC- -5'
6394 3' -68.6 NC_001847.1 + 53790 0.66 0.377369
Target:  5'- aCCGCaGCCGCCgcgaggaggucugCGCCCccuggcGCGcCGGaGCGg -3'
miRNA:   3'- gGGCG-CGGCGG-------------GCGGG------CGC-GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 9718 0.66 0.377369
Target:  5'- cCCUGCGCggccacuCGCuuGCCaCGCGacCGG-GCGg -3'
miRNA:   3'- -GGGCGCG-------GCGggCGG-GCGC--GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 57286 0.66 0.377369
Target:  5'- uCCCGgGCCGagagCGCCCccaGCGCGcuggccaGUGCGc -3'
miRNA:   3'- -GGGCgCGGCgg--GCGGG---CGCGC-------CACGC- -5'
6394 3' -68.6 NC_001847.1 + 127008 0.66 0.370641
Target:  5'- cCUCGCGCagcacCGCCCGCCCcuggggccccGCGCc-UGCGc -3'
miRNA:   3'- -GGGCGCG-----GCGGGCGGG----------CGCGccACGC- -5'
6394 3' -68.6 NC_001847.1 + 86083 0.66 0.378121
Target:  5'- gCUGcCGCCGCCCGCggCCGUGaGcUGCGc -3'
miRNA:   3'- gGGC-GCGGCGGGCG--GGCGCgCcACGC- -5'
6394 3' -68.6 NC_001847.1 + 99064 0.66 0.378121
Target:  5'- cUCCGCcaGCCGCgCGUCCaGCGCGccUGUGa -3'
miRNA:   3'- -GGGCG--CGGCGgGCGGG-CGCGCc-ACGC- -5'
6394 3' -68.6 NC_001847.1 + 100870 0.66 0.378121
Target:  5'- -gCGCGgCGCCCagccGCCgCGCGcCGGUcuGCGc -3'
miRNA:   3'- ggGCGCgGCGGG----CGG-GCGC-GCCA--CGC- -5'
6394 3' -68.6 NC_001847.1 + 128167 0.66 0.385702
Target:  5'- gCUGgGCgGCCCGCCgG-GCGGaaGCGc -3'
miRNA:   3'- gGGCgCGgCGGGCGGgCgCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 70122 0.66 0.385702
Target:  5'- gCCaCGUGgCGCUCGCgCCGCuuGCGGUccGCu -3'
miRNA:   3'- -GG-GCGCgGCGGGCG-GGCG--CGCCA--CGc -5'
6394 3' -68.6 NC_001847.1 + 44098 0.66 0.385702
Target:  5'- gUCUGCGCC-CgCCGCCUGCGCgcaagaugagccGGUuGCu -3'
miRNA:   3'- -GGGCGCGGcG-GGCGGGCGCG------------CCA-CGc -5'
6394 3' -68.6 NC_001847.1 + 42078 0.66 0.385702
Target:  5'- gCUGCGgCGCaUCGgCCuCGCGGUGCc -3'
miRNA:   3'- gGGCGCgGCG-GGCgGGcGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 19856 0.66 0.38494
Target:  5'- gCCCGCGCCcgggggcGCCggcuuaGCCCGCcaccgccaaccgGCGGaGUGg -3'
miRNA:   3'- -GGGCGCGG-------CGGg-----CGGGCG------------CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 85913 0.66 0.381142
Target:  5'- gCCGCGUCGCagacguacacgaaGCCCGCGggcccCGGcGCGa -3'
miRNA:   3'- gGGCGCGGCGgg-----------CGGGCGC-----GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 116801 0.66 0.378121
Target:  5'- gCUGcCGCCgacgguaacgcGCCUGCagCCGCGCGuGUGCu -3'
miRNA:   3'- gGGC-GCGG-----------CGGGCG--GGCGCGC-CACGc -5'
6394 3' -68.6 NC_001847.1 + 88696 0.66 0.378121
Target:  5'- aUCCGCGCgcgcauccccacCGCCgCGCCCGaggagGCuGUGCu -3'
miRNA:   3'- -GGGCGCG------------GCGG-GCGGGCg----CGcCACGc -5'
6394 3' -68.6 NC_001847.1 + 83705 0.66 0.378121
Target:  5'- -aUGuCGCCGUCCauGUCgCGCGCGG-GCGg -3'
miRNA:   3'- ggGC-GCGGCGGG--CGG-GCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 37078 0.66 0.378121
Target:  5'- -aCGCGgUacugGCCCGCCUgaGCGCGGagaGCGg -3'
miRNA:   3'- ggGCGCgG----CGGGCGGG--CGCGCCa--CGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.