miRNA display CGI


Results 21 - 40 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 21739 0.79 0.043394
Target:  5'- gCCgGCGCCgGCCCGCgCGCGCGGggggGCc -3'
miRNA:   3'- -GGgCGCGG-CGGGCGgGCGCGCCa---CGc -5'
6394 3' -68.6 NC_001847.1 + 46581 0.79 0.050382
Target:  5'- gUCCGCGCCGggcgucagcCCCGCCgGCGCGGccucGCGg -3'
miRNA:   3'- -GGGCGCGGC---------GGGCGGgCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 124552 0.79 0.043394
Target:  5'- gCCgGCGCCgGCCCGCgCGCGCGGggggGCc -3'
miRNA:   3'- -GGgCGCGG-CGGGCGgGCGCGCCa---CGc -5'
6394 3' -68.6 NC_001847.1 + 59364 0.78 0.054276
Target:  5'- gCCGCGCCgaGCCCGCggccguguucacCCGCGCGGcggGCGa -3'
miRNA:   3'- gGGCGCGG--CGGGCG------------GGCGCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 67587 0.78 0.055638
Target:  5'- gCCCGCGCCGaucugggagaaCCGCCCGCGCc-UGCGg -3'
miRNA:   3'- -GGGCGCGGCg----------GGCGGGCGCGccACGC- -5'
6394 3' -68.6 NC_001847.1 + 56845 0.78 0.058462
Target:  5'- gCCGCGCCGCgCCGUCUGCGCccgGCGg -3'
miRNA:   3'- gGGCGCGGCG-GGCGGGCGCGccaCGC- -5'
6394 3' -68.6 NC_001847.1 + 61434 0.78 0.054276
Target:  5'- gCCCGCgGCCGCgCCGCCgGgCGCGGcgagGCGg -3'
miRNA:   3'- -GGGCG-CGGCG-GGCGGgC-GCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 31909 0.78 0.057033
Target:  5'- gCCGcCGCCGCCCGCCCGCccCGG-GCc -3'
miRNA:   3'- gGGC-GCGGCGGGCGGGCGc-GCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 82835 0.78 0.054276
Target:  5'- uCCCgguugGCGCCGCCCGCgCC-CGCGGUcGCGc -3'
miRNA:   3'- -GGG-----CGCGGCGGGCG-GGcGCGCCA-CGC- -5'
6394 3' -68.6 NC_001847.1 + 59120 0.78 0.054276
Target:  5'- gCCGcCGCCGCuCCGgCCGCGCGG-GUGg -3'
miRNA:   3'- gGGC-GCGGCG-GGCgGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 13132 0.78 0.054276
Target:  5'- gCgGCGCCGCgCCGCCUGcCGCGGccgGCGg -3'
miRNA:   3'- gGgCGCGGCG-GGCGGGC-GCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 16898 0.77 0.06779
Target:  5'- gCUGCGUCGCCgGUCuCGCGCGG-GCGg -3'
miRNA:   3'- gGGCGCGGCGGgCGG-GCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 29187 0.77 0.069478
Target:  5'- gCCGCGCCGCCgGCgCCGCcgggcuccCGGUGCu -3'
miRNA:   3'- gGGCGCGGCGGgCG-GGCGc-------GCCACGc -5'
6394 3' -68.6 NC_001847.1 + 3787 0.77 0.061424
Target:  5'- gCCCGCGCCGCCgaagcgcacgCGgCCGgGCGGcgGCGg -3'
miRNA:   3'- -GGGCGCGGCGG----------GCgGGCgCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 72660 0.77 0.069478
Target:  5'- cCCCGCgGCCGCCCGCCgGCGacccCGGcccUGCu -3'
miRNA:   3'- -GGGCG-CGGCGGGCGGgCGC----GCC---ACGc -5'
6394 3' -68.6 NC_001847.1 + 24193 0.77 0.066141
Target:  5'- cCCCGCGaggcucgucggcCCGCCCGCCC-CGCGGuUGUa -3'
miRNA:   3'- -GGGCGC------------GGCGGGCGGGcGCGCC-ACGc -5'
6394 3' -68.6 NC_001847.1 + 61864 0.77 0.069478
Target:  5'- gCCGCGCCuGCCggCGCCCGCGgGGguUGCa -3'
miRNA:   3'- gGGCGCGG-CGG--GCGGGCGCgCC--ACGc -5'
6394 3' -68.6 NC_001847.1 + 71693 0.77 0.064531
Target:  5'- gCCCGC-CgCGUCCGCguCUGCGCGGUGCGc -3'
miRNA:   3'- -GGGCGcG-GCGGGCG--GGCGCGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 106810 0.77 0.059925
Target:  5'- gCCGCGCUGCCCGCCgGCgaGCGGcacGCa -3'
miRNA:   3'- gGGCGCGGCGGGCGGgCG--CGCCa--CGc -5'
6394 3' -68.6 NC_001847.1 + 79992 0.77 0.061424
Target:  5'- gCUGCGCggcggugaCGCCCcgcGCCCGCGCGGaUGCGa -3'
miRNA:   3'- gGGCGCG--------GCGGG---CGGGCGCGCC-ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.