miRNA display CGI


Results 41 - 60 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 98654 0.77 0.059925
Target:  5'- gCCCagaaGgGCCGCCacgCGCCCGCGCaGGUGCa -3'
miRNA:   3'- -GGG----CgCGGCGG---GCGGGCGCG-CCACGc -5'
6394 3' -68.6 NC_001847.1 + 29522 0.77 0.066141
Target:  5'- gCCGCagaGCUCGCCCGCGCGGcGCGg -3'
miRNA:   3'- gGGCGcggCGGGCGGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 42179 0.77 0.069478
Target:  5'- gCCGC-CCGCCCGCCCGaGCcGuGUGCGa -3'
miRNA:   3'- gGGCGcGGCGGGCGGGCgCG-C-CACGC- -5'
6394 3' -68.6 NC_001847.1 + 5636 0.77 0.061424
Target:  5'- uCCCGCGCgCGCCaaagaGCCCGUccaGCGGaUGCGc -3'
miRNA:   3'- -GGGCGCG-GCGGg----CGGGCG---CGCC-ACGC- -5'
6394 3' -68.6 NC_001847.1 + 72660 0.77 0.069478
Target:  5'- cCCCGCgGCCGCCCGCCgGCGacccCGGcccUGCu -3'
miRNA:   3'- -GGGCG-CGGCGGGCGGgCGC----GCC---ACGc -5'
6394 3' -68.6 NC_001847.1 + 3787 0.77 0.061424
Target:  5'- gCCCGCGCCGCCgaagcgcacgCGgCCGgGCGGcgGCGg -3'
miRNA:   3'- -GGGCGCGGCGG----------GCgGGCgCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 106810 0.77 0.059925
Target:  5'- gCCGCGCUGCCCGCCgGCgaGCGGcacGCa -3'
miRNA:   3'- gGGCGCGGCGGGCGGgCG--CGCCa--CGc -5'
6394 3' -68.6 NC_001847.1 + 71693 0.77 0.064531
Target:  5'- gCCCGC-CgCGUCCGCguCUGCGCGGUGCGc -3'
miRNA:   3'- -GGGCGcG-GCGGGCG--GGCGCGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 61864 0.77 0.069478
Target:  5'- gCCGCGCCuGCCggCGCCCGCGgGGguUGCa -3'
miRNA:   3'- gGGCGCGG-CGG--GCGGGCGCgCC--ACGc -5'
6394 3' -68.6 NC_001847.1 + 80764 0.76 0.074789
Target:  5'- gCCCGCgGCCGCCCGCCgcagcagcuCGCGCaGcGCGu -3'
miRNA:   3'- -GGGCG-CGGCGGGCGG---------GCGCGcCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 48614 0.76 0.080487
Target:  5'- gCCGCGCCGCCagcacgcgggCGCCCagccgccgcGCGaCGGUGCa -3'
miRNA:   3'- gGGCGCGGCGG----------GCGGG---------CGC-GCCACGc -5'
6394 3' -68.6 NC_001847.1 + 28529 0.76 0.078543
Target:  5'- gCCGcCGCCGCCCGgCCGCgugcgcuucgGCGGcGCGg -3'
miRNA:   3'- gGGC-GCGGCGGGCgGGCG----------CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 101645 0.76 0.072976
Target:  5'- gCCCGcCGCCGCCCGCgCCGC-CGccGCGg -3'
miRNA:   3'- -GGGC-GCGGCGGGCG-GGCGcGCcaCGC- -5'
6394 3' -68.6 NC_001847.1 + 67489 0.76 0.078543
Target:  5'- aCCGCGCCGCCgCGCCCcucgacgaggGCaCGGUcGCGg -3'
miRNA:   3'- gGGCGCGGCGG-GCGGG----------CGcGCCA-CGC- -5'
6394 3' -68.6 NC_001847.1 + 91895 0.76 0.080487
Target:  5'- cCCCggGCGCCGCgCCGCCCGCGCGc---- -3'
miRNA:   3'- -GGG--CGCGGCG-GGCGGGCGCGCcacgc -5'
6394 3' -68.6 NC_001847.1 + 10573 0.76 0.078543
Target:  5'- gCCCgGCGCCGgcggccccCCCGCgCGCGCGGgccgGCGc -3'
miRNA:   3'- -GGG-CGCGGC--------GGGCGgGCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 80333 0.76 0.082477
Target:  5'- aCCGUGCCcgcGCUCGCCaGCGCGGcGCGg -3'
miRNA:   3'- gGGCGCGG---CGGGCGGgCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 53570 0.76 0.072976
Target:  5'- uCCCGUaGCCGCCgGCCCcgcgcagcuGCGCGGggccgGCGa -3'
miRNA:   3'- -GGGCG-CGGCGGgCGGG---------CGCGCCa----CGC- -5'
6394 3' -68.6 NC_001847.1 + 33676 0.76 0.080487
Target:  5'- -gCGCGCCGCCCuugcGgCCGCGCGGcgGCa -3'
miRNA:   3'- ggGCGCGGCGGG----CgGGCGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 89630 0.76 0.078543
Target:  5'- gUCCGCGCCGCCCggcggcggcGCCCGCccCGG-GCGu -3'
miRNA:   3'- -GGGCGCGGCGGG---------CGGGCGc-GCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.