miRNA display CGI


Results 61 - 80 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 10573 0.76 0.078543
Target:  5'- gCCCgGCGCCGgcggccccCCCGCgCGCGCGGgccgGCGc -3'
miRNA:   3'- -GGG-CGCGGC--------GGGCGgGCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 53570 0.76 0.072976
Target:  5'- uCCCGUaGCCGCCgGCCCcgcgcagcuGCGCGGggccgGCGa -3'
miRNA:   3'- -GGGCG-CGGCGGgCGGG---------CGCGCCa----CGC- -5'
6394 3' -68.6 NC_001847.1 + 33676 0.76 0.080487
Target:  5'- -gCGCGCCGCCCuugcGgCCGCGCGGcgGCa -3'
miRNA:   3'- ggGCGCGGCGGG----CgGGCGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 91895 0.76 0.080487
Target:  5'- cCCCggGCGCCGCgCCGCCCGCGCGc---- -3'
miRNA:   3'- -GGG--CGCGGCG-GGCGGGCGCGCcacgc -5'
6394 3' -68.6 NC_001847.1 + 101645 0.76 0.072976
Target:  5'- gCCCGcCGCCGCCCGCgCCGC-CGccGCGg -3'
miRNA:   3'- -GGGC-GCGGCGGGCG-GGCGcGCcaCGC- -5'
6394 3' -68.6 NC_001847.1 + 102776 0.76 0.080487
Target:  5'- gCCCGCGacgccggCGCCC-CCCGCGCGGggGCu -3'
miRNA:   3'- -GGGCGCg------GCGGGcGGGCGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 73836 0.76 0.072976
Target:  5'- cCCCGCGCa-CCCGCgcaaaaaacgCCGcCGCGGUGCGc -3'
miRNA:   3'- -GGGCGCGgcGGGCG----------GGC-GCGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 49273 0.76 0.072976
Target:  5'- gCUCGCGCUGCUCG-CCGCGCGGagccGCGa -3'
miRNA:   3'- -GGGCGCGGCGGGCgGGCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 113386 0.76 0.078543
Target:  5'- gCCCgGCGCCGgcggccccCCCGCgCGCGCGGgccgGCGc -3'
miRNA:   3'- -GGG-CGCGGC--------GGGCGgGCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 48614 0.76 0.080487
Target:  5'- gCCGCGCCGCCagcacgcgggCGCCCagccgccgcGCGaCGGUGCa -3'
miRNA:   3'- gGGCGCGGCGG----------GCGGG---------CGC-GCCACGc -5'
6394 3' -68.6 NC_001847.1 + 61387 0.76 0.083287
Target:  5'- gCCCGCGCCGCCgCccggcgcuuggaacuGCCCuCGCGGgagGCGc -3'
miRNA:   3'- -GGGCGCGGCGG-G---------------CGGGcGCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 32917 0.76 0.080487
Target:  5'- gCCUGgaCGCCGuCCCGCCgacgacccgCGCGCGGUGCc -3'
miRNA:   3'- -GGGC--GCGGC-GGGCGG---------GCGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 28529 0.76 0.078543
Target:  5'- gCCGcCGCCGCCCGgCCGCgugcgcuucgGCGGcGCGg -3'
miRNA:   3'- gGGC-GCGGCGGGCgGGCG----------CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 32277 0.76 0.074789
Target:  5'- gCUCGCGCCGUCCGCgUgGCGCGGccccGCGa -3'
miRNA:   3'- -GGGCGCGGCGGGCG-GgCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 62149 0.76 0.072976
Target:  5'- gCCCGCGCUGCggCCagcuCCCGCGCGG-GCGc -3'
miRNA:   3'- -GGGCGCGGCG--GGc---GGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 29030 0.75 0.097778
Target:  5'- gCCCGCGCCGCgCuCGCCgagcugCGCGCcGUGCu -3'
miRNA:   3'- -GGGCGCGGCG-G-GCGG------GCGCGcCACGc -5'
6394 3' -68.6 NC_001847.1 + 114125 0.75 0.095439
Target:  5'- cUCUGCGCaggguCGCCCGCacagccgCGCGCGGUGCc -3'
miRNA:   3'- -GGGCGCG-----GCGGGCGg------GCGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 912 0.75 0.097778
Target:  5'- gCCgGcCGCCGCCCGCCgGCGcCGGgaaGCc -3'
miRNA:   3'- -GGgC-GCGGCGGGCGGgCGC-GCCa--CGc -5'
6394 3' -68.6 NC_001847.1 + 119 0.75 0.097778
Target:  5'- cCCCGCGCCccggcCCCGCCCGCGggccuCGG-GCc -3'
miRNA:   3'- -GGGCGCGGc----GGGCGGGCGC-----GCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 85099 0.75 0.097778
Target:  5'- aCCCGCgGCCGCCaccgCGCCC-CGCGG-GCu -3'
miRNA:   3'- -GGGCG-CGGCGG----GCGGGcGCGCCaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.