Results 1 - 20 of 1045 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6394 | 3' | -68.6 | NC_001847.1 | + | 93329 | 1.09 | 0.000271 |
Target: 5'- aCCCGCGCCGCCCGCCCGCGCGGUGCGu -3' miRNA: 3'- -GGGCGCGGCGGGCGGGCGCGCCACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 90855 | 0.83 | 0.022605 |
Target: 5'- gCCGCGCCGCgCCGCgCCGC-CGGUGUGg -3' miRNA: 3'- gGGCGCGGCG-GGCG-GGCGcGCCACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 39391 | 0.82 | 0.029073 |
Target: 5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3' miRNA: 3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 39418 | 0.82 | 0.029073 |
Target: 5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3' miRNA: 3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 39472 | 0.82 | 0.029073 |
Target: 5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3' miRNA: 3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 39499 | 0.82 | 0.029073 |
Target: 5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3' miRNA: 3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 39364 | 0.82 | 0.029073 |
Target: 5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3' miRNA: 3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 39445 | 0.82 | 0.029073 |
Target: 5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3' miRNA: 3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 61960 | 0.81 | 0.031347 |
Target: 5'- gCCCGCGCgccgUGCCCGCCgGCGCGGcggGCa -3' miRNA: 3'- -GGGCGCG----GCGGGCGGgCGCGCCa--CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 105166 | 0.81 | 0.034653 |
Target: 5'- gCCGCGCCgGCCCGgCCGCGuCGGcgGCGg -3' miRNA: 3'- gGGCGCGG-CGGGCgGGCGC-GCCa-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 2353 | 0.81 | 0.034653 |
Target: 5'- gCCGCGCCgGCCCGgCCGCGuCGGcgGCGg -3' miRNA: 3'- gGGCGCGG-CGGGCgGGCGC-GCCa-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 99148 | 0.8 | 0.040264 |
Target: 5'- gCCCGCgGCCGCCUGCa-GCGCGGcUGCGc -3' miRNA: 3'- -GGGCG-CGGCGGGCGggCGCGCC-ACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 30006 | 0.8 | 0.041282 |
Target: 5'- gCCGcCGCUGCCCGCCCGCGUGcUGgGg -3' miRNA: 3'- gGGC-GCGGCGGGCGGGCGCGCcACgC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 132819 | 0.8 | 0.041282 |
Target: 5'- gCCGcCGCUGCCCGCCCGCGUGcUGgGg -3' miRNA: 3'- gGGC-GCGGCGGGCGGGCGCGCcACgC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 276 | 0.8 | 0.042325 |
Target: 5'- gCCCGgggGCCGCCgaGCCCGCGCGG-GCGc -3' miRNA: 3'- -GGGCg--CGGCGGg-CGGGCGCGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 103089 | 0.8 | 0.042325 |
Target: 5'- gCCCGgggGCCGCCgaGCCCGCGCGG-GCGc -3' miRNA: 3'- -GGGCg--CGGCGGg-CGGGCGCGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 124552 | 0.79 | 0.043394 |
Target: 5'- gCCgGCGCCgGCCCGCgCGCGCGGggggGCc -3' miRNA: 3'- -GGgCGCGG-CGGGCGgGCGCGCCa---CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 21739 | 0.79 | 0.043394 |
Target: 5'- gCCgGCGCCgGCCCGCgCGCGCGGggggGCc -3' miRNA: 3'- -GGgCGCGG-CGGGCGgGCGCGCCa---CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 64453 | 0.79 | 0.047939 |
Target: 5'- cCCCGcCGCCGCCCGCggCgGCGCGGgggGCc -3' miRNA: 3'- -GGGC-GCGGCGGGCG--GgCGCGCCa--CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 105596 | 0.79 | 0.050257 |
Target: 5'- gUCCGUGCgggggaacucgagCGCCCGCgCCGCGCGG-GCGa -3' miRNA: 3'- -GGGCGCG-------------GCGGGCG-GGCGCGCCaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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