miRNA display CGI


Results 61 - 80 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 2179 0.76 0.078543
Target:  5'- gCCCGCGCCGCCUggGCggCGUGCGG-GCGc -3'
miRNA:   3'- -GGGCGCGGCGGG--CGg-GCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 10573 0.76 0.078543
Target:  5'- gCCCgGCGCCGgcggccccCCCGCgCGCGCGGgccgGCGc -3'
miRNA:   3'- -GGG-CGCGGC--------GGGCGgGCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 67489 0.76 0.078543
Target:  5'- aCCGCGCCGCCgCGCCCcucgacgaggGCaCGGUcGCGg -3'
miRNA:   3'- gGGCGCGGCGG-GCGGG----------CGcGCCA-CGC- -5'
6394 3' -68.6 NC_001847.1 + 28529 0.76 0.078543
Target:  5'- gCCGcCGCCGCCCGgCCGCgugcgcuucgGCGGcGCGg -3'
miRNA:   3'- gGGC-GCGGCGGGCgGGCG----------CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 131342 0.76 0.078543
Target:  5'- gCCGcCGCCGCCCGgCCGCgugcgcuucgGCGGcGCGg -3'
miRNA:   3'- gGGC-GCGGCGGGCgGGCG----------CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 89630 0.76 0.078543
Target:  5'- gUCCGCGCCGCCCggcggcggcGCCCGCccCGG-GCGu -3'
miRNA:   3'- -GGGCGCGGCGGG---------CGGGCGc-GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 48614 0.76 0.080487
Target:  5'- gCCGCGCCGCCagcacgcgggCGCCCagccgccgcGCGaCGGUGCa -3'
miRNA:   3'- gGGCGCGGCGG----------GCGGG---------CGC-GCCACGc -5'
6394 3' -68.6 NC_001847.1 + 33676 0.76 0.080487
Target:  5'- -gCGCGCCGCCCuugcGgCCGCGCGGcgGCa -3'
miRNA:   3'- ggGCGCGGCGGG----CgGGCGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 32917 0.76 0.080487
Target:  5'- gCCUGgaCGCCGuCCCGCCgacgacccgCGCGCGGUGCc -3'
miRNA:   3'- -GGGC--GCGGC-GGGCGG---------GCGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 91895 0.76 0.080487
Target:  5'- cCCCggGCGCCGCgCCGCCCGCGCGc---- -3'
miRNA:   3'- -GGG--CGCGGCG-GGCGGGCGCGCcacgc -5'
6394 3' -68.6 NC_001847.1 + 102776 0.76 0.080487
Target:  5'- gCCCGCGacgccggCGCCC-CCCGCGCGGggGCu -3'
miRNA:   3'- -GGGCGCg------GCGGGcGGGCGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 73149 0.76 0.081875
Target:  5'- cCCCGCGCCGCUCuucgggcccauuauGCCCGCcGCGccgGCGg -3'
miRNA:   3'- -GGGCGCGGCGGG--------------CGGGCG-CGCca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 48837 0.76 0.082477
Target:  5'- gCCGCGCgggggCGCCuCGgCCGCGCGGcGCGa -3'
miRNA:   3'- gGGCGCG-----GCGG-GCgGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 80333 0.76 0.082477
Target:  5'- aCCGUGCCcgcGCUCGCCaGCGCGGcGCGg -3'
miRNA:   3'- gGGCGCGG---CGGGCGGgCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 61387 0.76 0.083287
Target:  5'- gCCCGCGCCGCCgCccggcgcuuggaacuGCCCuCGCGGgagGCGc -3'
miRNA:   3'- -GGGCGCGGCGG-G---------------CGGGcGCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 93985 0.75 0.084514
Target:  5'- gCCCGCGCCGCgCGCUCacuCGCGGUuCGa -3'
miRNA:   3'- -GGGCGCGGCGgGCGGGc--GCGCCAcGC- -5'
6394 3' -68.6 NC_001847.1 + 59808 0.75 0.084514
Target:  5'- aCCacUGCCGCCCGCCCgggaGCGCGGUGg- -3'
miRNA:   3'- gGGc-GCGGCGGGCGGG----CGCGCCACgc -5'
6394 3' -68.6 NC_001847.1 + 123813 0.75 0.084514
Target:  5'- uCCCGCuccggcgccaGCCGCCCGCCgGCcucgGCGG-GCGc -3'
miRNA:   3'- -GGGCG----------CGGCGGGCGGgCG----CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 7162 0.75 0.084514
Target:  5'- gUCGCGCuCGCUCGCCCGgGCGGUuCa -3'
miRNA:   3'- gGGCGCG-GCGGGCGGGCgCGCCAcGc -5'
6394 3' -68.6 NC_001847.1 + 106282 0.75 0.084514
Target:  5'- cCCCaGCGCCGCCggcguCGCgCGCGCGGccGCGc -3'
miRNA:   3'- -GGG-CGCGGCGG-----GCGgGCGCGCCa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.