miRNA display CGI


Results 81 - 100 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 33000 0.75 0.084514
Target:  5'- gCCGCGCCGCCgUGgUCGCGCGGagUGCc -3'
miRNA:   3'- gGGCGCGGCGG-GCgGGCGCGCC--ACGc -5'
6394 3' -68.6 NC_001847.1 + 123813 0.75 0.084514
Target:  5'- uCCCGCuccggcgccaGCCGCCCGCCgGCcucgGCGG-GCGc -3'
miRNA:   3'- -GGGCG----------CGGCGGGCGGgCG----CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 7162 0.75 0.084514
Target:  5'- gUCGCGCuCGCUCGCCCGgGCGGUuCa -3'
miRNA:   3'- gGGCGCG-GCGGGCGGGCgCGCCAcGc -5'
6394 3' -68.6 NC_001847.1 + 78786 0.75 0.084514
Target:  5'- gUCGUGCCGCCCGCgCC-CGCGGaGCa -3'
miRNA:   3'- gGGCGCGGCGGGCG-GGcGCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 59643 0.75 0.086389
Target:  5'- aCCGCGCUcuuuugaGCCCGCUCGCGCccgcccGUGCGc -3'
miRNA:   3'- gGGCGCGG-------CGGGCGGGCGCGc-----CACGC- -5'
6394 3' -68.6 NC_001847.1 + 3230 0.75 0.086599
Target:  5'- uCgCGCGCCGCCCGCgCCGUGCucgccgGCGg -3'
miRNA:   3'- -GgGCGCGGCGGGCG-GGCGCGcca---CGC- -5'
6394 3' -68.6 NC_001847.1 + 106043 0.75 0.086599
Target:  5'- uCgCGCGCCGCCCGCgCCGUGCucgccgGCGg -3'
miRNA:   3'- -GgGCGCGGCGGGCG-GGCGCGcca---CGC- -5'
6394 3' -68.6 NC_001847.1 + 57566 0.75 0.086599
Target:  5'- gCCGUGCgaGCUCgGCCCGCGCGGccGCGg -3'
miRNA:   3'- gGGCGCGg-CGGG-CGGGCGCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 38311 0.75 0.088733
Target:  5'- aCCGUGuaGCCaaCGCCCGCGCGGUcGCc -3'
miRNA:   3'- gGGCGCggCGG--GCGGGCGCGCCA-CGc -5'
6394 3' -68.6 NC_001847.1 + 69687 0.75 0.088733
Target:  5'- cUCCGCGCgCGCCCGCCuacaCGgGCGG-GCu -3'
miRNA:   3'- -GGGCGCG-GCGGGCGG----GCgCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 80564 0.75 0.088733
Target:  5'- gCCaGCGCCGCCCaGCCCGCG-GG-GCc -3'
miRNA:   3'- gGG-CGCGGCGGG-CGGGCGCgCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 61914 0.75 0.089601
Target:  5'- gCCCGCGCCG-CCGCCCcccuccuccgcgucaGCGgCGGcGCGg -3'
miRNA:   3'- -GGGCGCGGCgGGCGGG---------------CGC-GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 66045 0.75 0.090917
Target:  5'- -aCGCGgcCCGCCCGUCCGCGCGcG-GCGc -3'
miRNA:   3'- ggGCGC--GGCGGGCGGGCGCGC-CaCGC- -5'
6394 3' -68.6 NC_001847.1 + 32142 0.75 0.090917
Target:  5'- --gGCGCCGCCgCGCCCGCGCacgccgcgacgGcGUGCGc -3'
miRNA:   3'- gggCGCGGCGG-GCGGGCGCG-----------C-CACGC- -5'
6394 3' -68.6 NC_001847.1 + 89310 0.75 0.090917
Target:  5'- gCCGUGCCGCCCagcgagugGCCCGgGCGGcaGCu -3'
miRNA:   3'- gGGCGCGGCGGG--------CGGGCgCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 123289 0.75 0.090917
Target:  5'- gCUCGCGCCGCCCGCa-GgGCGGcGCc -3'
miRNA:   3'- -GGGCGCGGCGGGCGggCgCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 46748 0.75 0.090917
Target:  5'- aCCCGacgGCgCGCCCGCCCgccGCGCGGgGCc -3'
miRNA:   3'- -GGGCg--CG-GCGGGCGGG---CGCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 124307 0.75 0.090917
Target:  5'- gCCaCGCGCCG-CCGUCgCGCGCaGGUGCu -3'
miRNA:   3'- -GG-GCGCGGCgGGCGG-GCGCG-CCACGc -5'
6394 3' -68.6 NC_001847.1 + 93088 0.75 0.093152
Target:  5'- cCCCGCGCgCGCCCGCaaa-GCGGgGCGg -3'
miRNA:   3'- -GGGCGCG-GCGGGCGggcgCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 132587 0.75 0.095208
Target:  5'- gCCCGCGCCgaagacaGCCCGCCgGagagcaGCGGUcccGCGg -3'
miRNA:   3'- -GGGCGCGG-------CGGGCGGgCg-----CGCCA---CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.