Results 1 - 20 of 1045 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6394 | 3' | -68.6 | NC_001847.1 | + | 73546 | 0.66 | 0.393383 |
Target: 5'- aCCGCGCguaCUCgGCCUuugaguGCGCGGUGCu -3' miRNA: 3'- gGGCGCGgc-GGG-CGGG------CGCGCCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 89079 | 0.66 | 0.393383 |
Target: 5'- gCgGCGCucuuuCGCCCGCCCaucaaGCuCGaGUGCGa -3' miRNA: 3'- gGgCGCG-----GCGGGCGGG-----CGcGC-CACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 12686 | 0.66 | 0.393383 |
Target: 5'- gCUGCaCUGCgCGUCgGCGgGGUGCa -3' miRNA: 3'- gGGCGcGGCGgGCGGgCGCgCCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 44583 | 0.66 | 0.393383 |
Target: 5'- gCUCGuCGUCGCCCuCgCGCGCGGcgaggGCc -3' miRNA: 3'- -GGGC-GCGGCGGGcGgGCGCGCCa----CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 130084 | 0.66 | 0.393383 |
Target: 5'- uCCCGgccCGCCGUCCGuCCCGU-CGGaGCc -3' miRNA: 3'- -GGGC---GCGGCGGGC-GGGCGcGCCaCGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 47147 | 0.66 | 0.393383 |
Target: 5'- gCCGCGCCccucggGCCCGgCCGCaaaGUGCc -3' miRNA: 3'- gGGCGCGG------CGGGCgGGCGcgcCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 51429 | 0.66 | 0.393383 |
Target: 5'- -aCGgaGCCGCCCGCgCGCGacauGGacgGCGa -3' miRNA: 3'- ggGCg-CGGCGGGCGgGCGCg---CCa--CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 52009 | 0.66 | 0.393383 |
Target: 5'- gCCCGaCGCCGCggCGgCCGCcGaggaGGUGCu -3' miRNA: 3'- -GGGC-GCGGCGg-GCgGGCG-Cg---CCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 79249 | 0.66 | 0.393383 |
Target: 5'- cCCCGaGCUGCuaGCCgGCGuCGGgccgcGCGg -3' miRNA: 3'- -GGGCgCGGCGggCGGgCGC-GCCa----CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 98520 | 0.66 | 0.393383 |
Target: 5'- gCCaGCuuGUCGCCCa-CCGCGCGGUaGCa -3' miRNA: 3'- gGG-CG--CGGCGGGcgGGCGCGCCA-CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 118749 | 0.66 | 0.393383 |
Target: 5'- --aGCGCUGCCacaCGCgCgguuguggCGCGCGGUGUGa -3' miRNA: 3'- gggCGCGGCGG---GCG-G--------GCGCGCCACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 19323 | 0.66 | 0.393383 |
Target: 5'- aUCCGCagaGCCCGCCgcagcgcagCGCGCGGaGCc -3' miRNA: 3'- -GGGCGcggCGGGCGG---------GCGCGCCaCGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 44929 | 0.66 | 0.393383 |
Target: 5'- aCCGUGUCGCUggggCGCUCGgGCuGG-GCGa -3' miRNA: 3'- gGGCGCGGCGG----GCGGGCgCG-CCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 27271 | 0.66 | 0.393383 |
Target: 5'- uCCCGgccCGCCGUCCGuCCCGU-CGGaGCc -3' miRNA: 3'- -GGGC---GCGGCGGGC-GGGCGcGCCaCGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 92406 | 0.66 | 0.393383 |
Target: 5'- aCCCagggggGCGCCaGCCCGaaCUCGCGcCGGUaaGCa -3' miRNA: 3'- -GGG------CGCGG-CGGGC--GGGCGC-GCCA--CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 73821 | 0.66 | 0.393383 |
Target: 5'- gCCGCGCUGCagCGgCUGCGCGuccUGCc -3' miRNA: 3'- gGGCGCGGCGg-GCgGGCGCGCc--ACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 72171 | 0.66 | 0.393383 |
Target: 5'- aCCUGCaaaGCCGgCgGCCCGauuGCGuGUGCc -3' miRNA: 3'- -GGGCG---CGGCgGgCGGGCg--CGC-CACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 56474 | 0.66 | 0.393383 |
Target: 5'- gCCCGCGUgCGCaCGCCgGCGacgcaGGcGCGc -3' miRNA: 3'- -GGGCGCG-GCGgGCGGgCGCg----CCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 54298 | 0.66 | 0.393383 |
Target: 5'- aCgCGCGCCGCCgcccggaucUGCCCccccaaguCGCGGcGCGc -3' miRNA: 3'- -GgGCGCGGCGG---------GCGGGc-------GCGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 31285 | 0.66 | 0.393383 |
Target: 5'- gCCCGCGggagaCGCUCGUgCUGCuGCGGcGCGc -3' miRNA: 3'- -GGGCGCg----GCGGGCG-GGCG-CGCCaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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