Results 21 - 40 of 1045 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6394 | 3' | -68.6 | NC_001847.1 | + | 73546 | 0.66 | 0.393383 |
Target: 5'- aCCGCGCguaCUCgGCCUuugaguGCGCGGUGCu -3' miRNA: 3'- gGGCGCGgc-GGG-CGGG------CGCGCCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 118749 | 0.66 | 0.393383 |
Target: 5'- --aGCGCUGCCacaCGCgCgguuguggCGCGCGGUGUGa -3' miRNA: 3'- gggCGCGGCGG---GCG-G--------GCGCGCCACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 31285 | 0.66 | 0.393383 |
Target: 5'- gCCCGCGggagaCGCUCGUgCUGCuGCGGcGCGc -3' miRNA: 3'- -GGGCGCg----GCGGGCG-GGCG-CGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 19323 | 0.66 | 0.393383 |
Target: 5'- aUCCGCagaGCCCGCCgcagcgcagCGCGCGGaGCc -3' miRNA: 3'- -GGGCGcggCGGGCGG---------GCGCGCCaCGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 54298 | 0.66 | 0.393383 |
Target: 5'- aCgCGCGCCGCCgcccggaucUGCCCccccaaguCGCGGcGCGc -3' miRNA: 3'- -GgGCGCGGCGG---------GCGGGc-------GCGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 14314 | 0.66 | 0.392611 |
Target: 5'- cCCCGCucccGCUGCUCGCgguggggCCggGCGUGGUGgCGg -3' miRNA: 3'- -GGGCG----CGGCGGGCG-------GG--CGCGCCAC-GC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 16174 | 0.66 | 0.391068 |
Target: 5'- cCCCGUugGCCGCggaCCccgaaucggaacugGCCCGCGCcaUGCGg -3' miRNA: 3'- -GGGCG--CGGCG---GG--------------CGGGCGCGccACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 110248 | 0.66 | 0.388763 |
Target: 5'- -aUGCGCgGCCUGCUCGCcCGGgacgagucgacgcgcUGCGa -3' miRNA: 3'- ggGCGCGgCGGGCGGGCGcGCC---------------ACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 121317 | 0.66 | 0.388763 |
Target: 5'- gCCGCGCgcggcaaacgaucuCGCUCGCgugugucuugguuuCUGCGCGGcggGCGg -3' miRNA: 3'- gGGCGCG--------------GCGGGCG--------------GGCGCGCCa--CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 120754 | 0.66 | 0.388763 |
Target: 5'- cCUCGCGCCaGCUCGgcgagccucuacgaCCGCGCGcugGCGg -3' miRNA: 3'- -GGGCGCGG-CGGGCg-------------GGCGCGCca-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 75300 | 0.66 | 0.385702 |
Target: 5'- aCCGCGCCugGCCggUGCCC-CGCGaG-GCGc -3' miRNA: 3'- gGGCGCGG--CGG--GCGGGcGCGC-CaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 132781 | 0.66 | 0.385702 |
Target: 5'- gCCGcCGCCGCCgacgcggccggGCCgGCGCGGcGgGa -3' miRNA: 3'- gGGC-GCGGCGGg----------CGGgCGCGCCaCgC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 131291 | 0.66 | 0.385702 |
Target: 5'- cCCCgGCGCCGUCuaCGUCUgGgGCGGcGCGa -3' miRNA: 3'- -GGG-CGCGGCGG--GCGGG-CgCGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 42078 | 0.66 | 0.385702 |
Target: 5'- gCUGCGgCGCaUCGgCCuCGCGGUGCc -3' miRNA: 3'- gGGCGCgGCG-GGCgGGcGCGCCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 44098 | 0.66 | 0.385702 |
Target: 5'- gUCUGCGCC-CgCCGCCUGCGCgcaagaugagccGGUuGCu -3' miRNA: 3'- -GGGCGCGGcG-GGCGGGCGCG------------CCA-CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 128167 | 0.66 | 0.385702 |
Target: 5'- gCUGgGCgGCCCGCCgG-GCGGaaGCGc -3' miRNA: 3'- gGGCgCGgCGGGCGGgCgCGCCa-CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 29968 | 0.66 | 0.385702 |
Target: 5'- gCCGcCGCCGCCgacgcggccggGCCgGCGCGGcGgGa -3' miRNA: 3'- gGGC-GCGGCGGg----------CGGgCGCGCCaCgC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 53179 | 0.66 | 0.385702 |
Target: 5'- gCCCGCGUgaugaGCgCGCCC--GCGGUGUu -3' miRNA: 3'- -GGGCGCGg----CGgGCGGGcgCGCCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 57685 | 0.66 | 0.385702 |
Target: 5'- gCCCgGCGcCCGCCCcaGCCCGC-CGacUGCu -3' miRNA: 3'- -GGG-CGC-GGCGGG--CGGGCGcGCc-ACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 74845 | 0.66 | 0.385702 |
Target: 5'- gCgCGCGCCGCCCGCC-GCccCGcUGCc -3' miRNA: 3'- -GgGCGCGGCGGGCGGgCGc-GCcACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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