miRNA display CGI


Results 41 - 60 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 74845 0.66 0.385702
Target:  5'- gCgCGCGCCGCCCGCC-GCccCGcUGCc -3'
miRNA:   3'- -GgGCGCGGCGGGCGGgCGc-GCcACGc -5'
6394 3' -68.6 NC_001847.1 + 2226 0.66 0.385702
Target:  5'- gCCaGCGCCGCggCGCUgGgCGCGG-GCGu -3'
miRNA:   3'- gGG-CGCGGCGg-GCGGgC-GCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 43474 0.66 0.385702
Target:  5'- gCCGCaGCCGCagCCGCagCCGCGagagaGG-GCGa -3'
miRNA:   3'- gGGCG-CGGCG--GGCG--GGCGCg----CCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 53179 0.66 0.385702
Target:  5'- gCCCGCGUgaugaGCgCGCCC--GCGGUGUu -3'
miRNA:   3'- -GGGCGCGg----CGgGCGGGcgCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 51207 0.66 0.385702
Target:  5'- cCCCGCGCgCacuucgagcggGCCCuGCUCGCG-GGcGCGc -3'
miRNA:   3'- -GGGCGCG-G-----------CGGG-CGGGCGCgCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 29968 0.66 0.385702
Target:  5'- gCCGcCGCCGCCgacgcggccggGCCgGCGCGGcGgGa -3'
miRNA:   3'- gGGC-GCGGCGGg----------CGGgCGCGCCaCgC- -5'
6394 3' -68.6 NC_001847.1 + 128167 0.66 0.385702
Target:  5'- gCUGgGCgGCCCGCCgG-GCGGaaGCGc -3'
miRNA:   3'- gGGCgCGgCGGGCGGgCgCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 70122 0.66 0.385702
Target:  5'- gCCaCGUGgCGCUCGCgCCGCuuGCGGUccGCu -3'
miRNA:   3'- -GG-GCGCgGCGGGCG-GGCG--CGCCA--CGc -5'
6394 3' -68.6 NC_001847.1 + 44098 0.66 0.385702
Target:  5'- gUCUGCGCC-CgCCGCCUGCGCgcaagaugagccGGUuGCu -3'
miRNA:   3'- -GGGCGCGGcG-GGCGGGCGCG------------CCA-CGc -5'
6394 3' -68.6 NC_001847.1 + 42078 0.66 0.385702
Target:  5'- gCUGCGgCGCaUCGgCCuCGCGGUGCc -3'
miRNA:   3'- gGGCGCgGCG-GGCgGGcGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 57685 0.66 0.385702
Target:  5'- gCCCgGCGcCCGCCCcaGCCCGC-CGacUGCu -3'
miRNA:   3'- -GGG-CGC-GGCGGG--CGGGCGcGCc-ACGc -5'
6394 3' -68.6 NC_001847.1 + 75300 0.66 0.385702
Target:  5'- aCCGCGCCugGCCggUGCCC-CGCGaG-GCGc -3'
miRNA:   3'- gGGCGCGG--CGG--GCGGGcGCGC-CaCGC- -5'
6394 3' -68.6 NC_001847.1 + 131291 0.66 0.385702
Target:  5'- cCCCgGCGCCGUCuaCGUCUgGgGCGGcGCGa -3'
miRNA:   3'- -GGG-CGCGGCGG--GCGGG-CgCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 19856 0.66 0.38494
Target:  5'- gCCCGCGCCcgggggcGCCggcuuaGCCCGCcaccgccaaccgGCGGaGUGg -3'
miRNA:   3'- -GGGCGCGG-------CGGg-----CGGGCG------------CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 116428 0.66 0.38494
Target:  5'- gCCCGCuGgCGCUC-CCCGCggcgcugGCGGUGaCGc -3'
miRNA:   3'- -GGGCG-CgGCGGGcGGGCG-------CGCCAC-GC- -5'
6394 3' -68.6 NC_001847.1 + 85913 0.66 0.381142
Target:  5'- gCCGCGUCGCagacguacacgaaGCCCGCGggcccCGGcGCGa -3'
miRNA:   3'- gGGCGCGGCGgg-----------CGGGCGC-----GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 77489 0.66 0.378121
Target:  5'- gCCCgGC-CCGCCgGCCCGaGuCGGUGg- -3'
miRNA:   3'- -GGG-CGcGGCGGgCGGGCgC-GCCACgc -5'
6394 3' -68.6 NC_001847.1 + 87421 0.66 0.378121
Target:  5'- cCCCGC-CCGCCgCGCUCGaagaGCuGcUGCGc -3'
miRNA:   3'- -GGGCGcGGCGG-GCGGGCg---CGcC-ACGC- -5'
6394 3' -68.6 NC_001847.1 + 118234 0.66 0.378121
Target:  5'- --aGUGCaacuCCCGCCCGCGCGaGaccgGCGa -3'
miRNA:   3'- gggCGCGgc--GGGCGGGCGCGC-Ca---CGC- -5'
6394 3' -68.6 NC_001847.1 + 135004 0.66 0.378121
Target:  5'- cCCCG-GCCgggGCCCgagGCCCGCggGCGGggccgggGCGc -3'
miRNA:   3'- -GGGCgCGG---CGGG---CGGGCG--CGCCa------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.