miRNA display CGI


Results 61 - 80 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 44822 0.66 0.378121
Target:  5'- aCCGCGCCccaGUCgGCaauggGCGCGGUcGCGc -3'
miRNA:   3'- gGGCGCGG---CGGgCGgg---CGCGCCA-CGC- -5'
6394 3' -68.6 NC_001847.1 + 1943 0.66 0.378121
Target:  5'- aCUCGgGCCGCCgGCgcucguccucgCCGgGCGGcGCc -3'
miRNA:   3'- -GGGCgCGGCGGgCG-----------GGCgCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 32191 0.66 0.378121
Target:  5'- cCCCG-GCCgggGCCCgagGCCCGCggGCGGggccgggGCGc -3'
miRNA:   3'- -GGGCgCGG---CGGG---CGGGCG--CGCCa------CGC- -5'
6394 3' -68.6 NC_001847.1 + 75393 0.66 0.378121
Target:  5'- uCUCGCGUCG-CCGCCgCGagGCGGgcaucGCGg -3'
miRNA:   3'- -GGGCGCGGCgGGCGG-GCg-CGCCa----CGC- -5'
6394 3' -68.6 NC_001847.1 + 118234 0.66 0.378121
Target:  5'- --aGUGCaacuCCCGCCCGCGCGaGaccgGCGa -3'
miRNA:   3'- gggCGCGgc--GGGCGGGCGCGC-Ca---CGC- -5'
6394 3' -68.6 NC_001847.1 + 77489 0.66 0.378121
Target:  5'- gCCCgGC-CCGCCgGCCCGaGuCGGUGg- -3'
miRNA:   3'- -GGG-CGcGGCGGgCGGGCgC-GCCACgc -5'
6394 3' -68.6 NC_001847.1 + 83705 0.66 0.378121
Target:  5'- -aUGuCGCCGUCCauGUCgCGCGCGG-GCGg -3'
miRNA:   3'- ggGC-GCGGCGGG--CGG-GCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 86083 0.66 0.378121
Target:  5'- gCUGcCGCCGCCCGCggCCGUGaGcUGCGc -3'
miRNA:   3'- gGGC-GCGGCGGGCG--GGCGCgCcACGC- -5'
6394 3' -68.6 NC_001847.1 + 100870 0.66 0.378121
Target:  5'- -gCGCGgCGCCCagccGCCgCGCGcCGGUcuGCGc -3'
miRNA:   3'- ggGCGCgGCGGG----CGG-GCGC-GCCA--CGC- -5'
6394 3' -68.6 NC_001847.1 + 88696 0.66 0.378121
Target:  5'- aUCCGCGCgcgcauccccacCGCCgCGCCCGaggagGCuGUGCu -3'
miRNA:   3'- -GGGCGCG------------GCGG-GCGGGCg----CGcCACGc -5'
6394 3' -68.6 NC_001847.1 + 116801 0.66 0.378121
Target:  5'- gCUGcCGCCgacgguaacgcGCCUGCagCCGCGCGuGUGCu -3'
miRNA:   3'- gGGC-GCGG-----------CGGGCG--GGCGCGC-CACGc -5'
6394 3' -68.6 NC_001847.1 + 135004 0.66 0.378121
Target:  5'- cCCCG-GCCgggGCCCgagGCCCGCggGCGGggccgggGCGc -3'
miRNA:   3'- -GGGCgCGG---CGGG---CGGGCG--CGCCa------CGC- -5'
6394 3' -68.6 NC_001847.1 + 99064 0.66 0.378121
Target:  5'- cUCCGCcaGCCGCgCGUCCaGCGCGccUGUGa -3'
miRNA:   3'- -GGGCG--CGGCGgGCGGG-CGCGCc-ACGC- -5'
6394 3' -68.6 NC_001847.1 + 87421 0.66 0.378121
Target:  5'- cCCCGC-CCGCCgCGCUCGaagaGCuGcUGCGc -3'
miRNA:   3'- -GGGCGcGGCGG-GCGGGCg---CGcC-ACGC- -5'
6394 3' -68.6 NC_001847.1 + 112531 0.66 0.377369
Target:  5'- cCCUGCGCggccacuCGCuuGCCaCGCGacCGG-GCGg -3'
miRNA:   3'- -GGGCGCG-------GCGggCGG-GCGC--GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 9718 0.66 0.377369
Target:  5'- cCCUGCGCggccacuCGCuuGCCaCGCGacCGG-GCGg -3'
miRNA:   3'- -GGGCGCG-------GCGggCGG-GCGC--GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 57286 0.66 0.377369
Target:  5'- uCCCGgGCCGagagCGCCCccaGCGCGcuggccaGUGCGc -3'
miRNA:   3'- -GGGCgCGGCgg--GCGGG---CGCGC-------CACGC- -5'
6394 3' -68.6 NC_001847.1 + 53790 0.66 0.377369
Target:  5'- aCCGCaGCCGCCgcgaggaggucugCGCCCccuggcGCGcCGGaGCGg -3'
miRNA:   3'- gGGCG-CGGCGG-------------GCGGG------CGC-GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 50040 0.66 0.375866
Target:  5'- gCCCGCggggcgcgguggcgGCCGCggGUCCGCGCGcG-GCGc -3'
miRNA:   3'- -GGGCG--------------CGGCGggCGGGCGCGC-CaCGC- -5'
6394 3' -68.6 NC_001847.1 + 127008 0.66 0.370641
Target:  5'- cCUCGCGCagcacCGCCCGCCCcuggggccccGCGCc-UGCGc -3'
miRNA:   3'- -GGGCGCG-----GCGGGCGGG----------CGCGccACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.