miRNA display CGI


Results 1 - 20 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 3 0.71 0.168851
Target:  5'- cUCCGCGCCGCgCCGCgCGgGCccccUGCGa -3'
miRNA:   3'- -GGGCGCGGCG-GGCGgGCgCGcc--ACGC- -5'
6394 3' -68.6 NC_001847.1 + 119 0.75 0.097778
Target:  5'- cCCCGCGCCccggcCCCGCCCGCGggccuCGG-GCc -3'
miRNA:   3'- -GGGCGCGGc----GGGCGGGCGC-----GCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 276 0.8 0.042325
Target:  5'- gCCCGgggGCCGCCgaGCCCGCGCGG-GCGc -3'
miRNA:   3'- -GGGCg--CGGCGGg-CGGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 359 0.74 0.105127
Target:  5'- uUCGCGCCccgggGCCCGcCCCGCGCGccGCGc -3'
miRNA:   3'- gGGCGCGG-----CGGGC-GGGCGCGCcaCGC- -5'
6394 3' -68.6 NC_001847.1 + 492 0.67 0.327918
Target:  5'- gCCCGCGCCuCCgCGCCUGCuGcCGGcccGCc -3'
miRNA:   3'- -GGGCGCGGcGG-GCGGGCG-C-GCCa--CGc -5'
6394 3' -68.6 NC_001847.1 + 602 0.72 0.157456
Target:  5'- cUCCGCgGCCGCuCCGCagcggCGCGCGGcccGCGc -3'
miRNA:   3'- -GGGCG-CGGCG-GGCGg----GCGCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 872 0.67 0.334779
Target:  5'- uCCaCGCGCgGCggCgGCCCGCGcCGGggccgccGCGg -3'
miRNA:   3'- -GG-GCGCGgCG--GgCGGGCGC-GCCa------CGC- -5'
6394 3' -68.6 NC_001847.1 + 912 0.75 0.097778
Target:  5'- gCCgGcCGCCGCCCGCCgGCGcCGGgaaGCc -3'
miRNA:   3'- -GGgC-GCGGCGGGCGGgCGC-GCCa--CGc -5'
6394 3' -68.6 NC_001847.1 + 922 0.72 0.150249
Target:  5'- aCCCGgccuucccacCGCCGCCCucgGCCCGCGCGcGccgcuccacgcUGCGc -3'
miRNA:   3'- -GGGC----------GCGGCGGG---CGGGCGCGC-C-----------ACGC- -5'
6394 3' -68.6 NC_001847.1 + 963 0.66 0.369898
Target:  5'- aCUGCGCCGgcaCCCGggccggcggggcuUCCGcCGCGGcgGCGg -3'
miRNA:   3'- gGGCGCGGC---GGGC-------------GGGC-GCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 1226 0.69 0.242776
Target:  5'- gCgCGCGCCGCCCGCaggccagguacaCCGgccgcaGCGGcGCGc -3'
miRNA:   3'- -GgGCGCGGCGGGCG------------GGCg-----CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 1338 0.72 0.143344
Target:  5'- cCCCaGCGCCGCgC-CCUGCGCGGccauguccuUGCGc -3'
miRNA:   3'- -GGG-CGCGGCGgGcGGGCGCGCC---------ACGC- -5'
6394 3' -68.6 NC_001847.1 + 1393 0.7 0.193874
Target:  5'- -aCGCGCUGCCgGUacUCGCGCGGcgGCa -3'
miRNA:   3'- ggGCGCGGCGGgCG--GGCGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 1425 0.68 0.28282
Target:  5'- cCCCGCGC--CCCGCCaggcacuauuUGCGCucgGGUGCa -3'
miRNA:   3'- -GGGCGCGgcGGGCGG----------GCGCG---CCACGc -5'
6394 3' -68.6 NC_001847.1 + 1553 0.72 0.140001
Target:  5'- gCCCGC-CCGCCCgauagcgcGCCCGCGCcuGUGUc -3'
miRNA:   3'- -GGGCGcGGCGGG--------CGGGCGCGc-CACGc -5'
6394 3' -68.6 NC_001847.1 + 1592 0.71 0.168851
Target:  5'- -gCGCGCCGCUCggGCCagCGCGCGGcGCa -3'
miRNA:   3'- ggGCGCGGCGGG--CGG--GCGCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 1730 0.67 0.300882
Target:  5'- gCCGCGCCGCggCCaGCCgCGCGCagaGGUacuccaccgcgccGCGg -3'
miRNA:   3'- gGGCGCGGCG--GG-CGG-GCGCG---CCA-------------CGC- -5'
6394 3' -68.6 NC_001847.1 + 1834 0.67 0.321162
Target:  5'- uCCgGCG-CGCCCGUCCaGCGCccggcccagGcGUGCGa -3'
miRNA:   3'- -GGgCGCgGCGGGCGGG-CGCG---------C-CACGC- -5'
6394 3' -68.6 NC_001847.1 + 1858 0.66 0.348813
Target:  5'- cUCUGCGCCGgagCGCaCCGCGCGGcuuagacGCGc -3'
miRNA:   3'- -GGGCGCGGCgg-GCG-GGCGCGCCa------CGC- -5'
6394 3' -68.6 NC_001847.1 + 1896 0.71 0.177262
Target:  5'- gCCCaGCGCCGCgagcgcgugcgagaGCCCGcCGCGGcGCGg -3'
miRNA:   3'- -GGG-CGCGGCGgg------------CGGGC-GCGCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.