miRNA display CGI


Results 21 - 40 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 1943 0.66 0.378121
Target:  5'- aCUCGgGCCGCCgGCgcucguccucgCCGgGCGGcGCc -3'
miRNA:   3'- -GGGCgCGGCGGgCG-----------GGCgCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 2058 0.73 0.129164
Target:  5'- gCCaCGCGCCGCCgcagcgguggcggCgagcgccccgcgggGCCCGCGCGGcgGCGg -3'
miRNA:   3'- -GG-GCGCGGCGG-------------G--------------CGGGCGCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 2179 0.76 0.078543
Target:  5'- gCCCGCGCCGCCUggGCggCGUGCGG-GCGc -3'
miRNA:   3'- -GGGCGCGGCGGG--CGg-GCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 2226 0.66 0.385702
Target:  5'- gCCaGCGCCGCggCGCUgGgCGCGG-GCGu -3'
miRNA:   3'- gGG-CGCGGCGg-GCGGgC-GCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 2353 0.81 0.034653
Target:  5'- gCCGCGCCgGCCCGgCCGCGuCGGcgGCGg -3'
miRNA:   3'- gGGCGCGG-CGGGCgGGCGC-GCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 2360 0.67 0.320492
Target:  5'- gCCGCaugagguccaGUCGCgCGCCCGCgaagacgGCGGUGaCGc -3'
miRNA:   3'- gGGCG----------CGGCGgGCGGGCG-------CGCCAC-GC- -5'
6394 3' -68.6 NC_001847.1 + 2594 0.68 0.276793
Target:  5'- gCCGCgGCCgcacgcgaGCCCG-CCGCGCcggaGGUGCu -3'
miRNA:   3'- gGGCG-CGG--------CGGGCgGGCGCG----CCACGc -5'
6394 3' -68.6 NC_001847.1 + 2742 0.69 0.248194
Target:  5'- aCCG-GCC-CCCgGCCCgGCGCGGcgGCGc -3'
miRNA:   3'- gGGCgCGGcGGG-CGGG-CGCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 2774 0.67 0.31451
Target:  5'- gCCgGCGCC-CCCGCCgGCGgccuccaGGgccGCGa -3'
miRNA:   3'- -GGgCGCGGcGGGCGGgCGCg------CCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 2856 0.66 0.363262
Target:  5'- gCgCGCGCCagcGCCCagGCCgaCGCGCGG-GCc -3'
miRNA:   3'- -GgGCGCGG---CGGG--CGG--GCGCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 2889 0.72 0.150249
Target:  5'- gCCGCGCCGCgCGUcgaguaCCGCGCGa-GCGg -3'
miRNA:   3'- gGGCGCGGCGgGCG------GGCGCGCcaCGC- -5'
6394 3' -68.6 NC_001847.1 + 2928 0.74 0.10769
Target:  5'- gUCCGCGCCGCcagcgcggCCGCCUccaGCGCGGcgGCc -3'
miRNA:   3'- -GGGCGCGGCG--------GGCGGG---CGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 3029 0.68 0.294555
Target:  5'- gCCGCGCCgagcagcucggcgGCCCGgagcaCGCGCuccgGGUGCGc -3'
miRNA:   3'- gGGCGCGG-------------CGGGCgg---GCGCG----CCACGC- -5'
6394 3' -68.6 NC_001847.1 + 3199 0.71 0.185191
Target:  5'- gCCGuCGCCGCCauCGCCgGCGCacGUGCc -3'
miRNA:   3'- gGGC-GCGGCGG--GCGGgCGCGc-CACGc -5'
6394 3' -68.6 NC_001847.1 + 3228 0.67 0.307963
Target:  5'- cUCCGCGCCGCCgCGgCU-UGCGGUacagcaGCGa -3'
miRNA:   3'- -GGGCGCGGCGG-GCgGGcGCGCCA------CGC- -5'
6394 3' -68.6 NC_001847.1 + 3230 0.75 0.086599
Target:  5'- uCgCGCGCCGCCCGCgCCGUGCucgccgGCGg -3'
miRNA:   3'- -GgGCGCGGCGGGCG-GGCGCGcca---CGC- -5'
6394 3' -68.6 NC_001847.1 + 3269 0.68 0.28895
Target:  5'- gCCgGCGCCGCgCgGCCgGCGagcaCGGcGCGc -3'
miRNA:   3'- -GGgCGCGGCG-GgCGGgCGC----GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 3715 0.73 0.13353
Target:  5'- cCCCGCgGCCGCCgCGUagCGCGCGGccgccucGCGg -3'
miRNA:   3'- -GGGCG-CGGCGG-GCGg-GCGCGCCa------CGC- -5'
6394 3' -68.6 NC_001847.1 + 3721 0.67 0.301521
Target:  5'- aUCGCGCgCGCCgGCCacgGCGCGcacGCGg -3'
miRNA:   3'- gGGCGCG-GCGGgCGGg--CGCGCca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 3787 0.77 0.061424
Target:  5'- gCCCGCGCCGCCgaagcgcacgCGgCCGgGCGGcgGCGg -3'
miRNA:   3'- -GGGCGCGGCGG----------GCgGGCgCGCCa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.