miRNA display CGI


Results 41 - 60 of 1045 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 3922 0.67 0.321162
Target:  5'- gCCG-GuuGCgCGCCCGCGCuGGcgccGCGg -3'
miRNA:   3'- gGGCgCggCGgGCGGGCGCG-CCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 4014 0.67 0.307963
Target:  5'- gCCGgGCCcggcGCCCGCCUcuCGCGGgGCc -3'
miRNA:   3'- gGGCgCGG----CGGGCGGGc-GCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 4035 0.69 0.222083
Target:  5'- aCCGCGCCGCgCGCCC-CGagagauccaCGGUGa- -3'
miRNA:   3'- gGGCGCGGCGgGCGGGcGC---------GCCACgc -5'
6394 3' -68.6 NC_001847.1 + 4202 0.76 0.076644
Target:  5'- gCCgCGCGCaggcaGCCaaaGCCCuGCGCGGUGCc -3'
miRNA:   3'- -GG-GCGCGg----CGGg--CGGG-CGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 4297 0.66 0.355986
Target:  5'- gCCgGCGCCuugguacucgcGCgCCGCCUGCGgGuaGUGCu -3'
miRNA:   3'- -GGgCGCGG-----------CG-GGCGGGCGCgC--CACGc -5'
6394 3' -68.6 NC_001847.1 + 4339 0.67 0.327918
Target:  5'- gCCGCgGCCGCcuCCGCCCcggcCGCGGccGCc -3'
miRNA:   3'- gGGCG-CGGCG--GGCGGGc---GCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 4375 0.69 0.232236
Target:  5'- aCCGCGaCCGCgaGCgCGCGCGccGCGg -3'
miRNA:   3'- gGGCGC-GGCGggCGgGCGCGCcaCGC- -5'
6394 3' -68.6 NC_001847.1 + 4448 0.68 0.276793
Target:  5'- -aCGCGCaCGCCgugaaaGgCCGCGCGGUugacgGCGg -3'
miRNA:   3'- ggGCGCG-GCGGg-----CgGGCGCGCCA-----CGC- -5'
6394 3' -68.6 NC_001847.1 + 4536 0.74 0.102622
Target:  5'- cCUCGCGgCGgCCGCCCGCG-GGUGgCGc -3'
miRNA:   3'- -GGGCGCgGCgGGCGGGCGCgCCAC-GC- -5'
6394 3' -68.6 NC_001847.1 + 4646 0.66 0.370641
Target:  5'- gCUCGCG-CGCCUcaGCCCGaCGCGccGCGu -3'
miRNA:   3'- -GGGCGCgGCGGG--CGGGC-GCGCcaCGC- -5'
6394 3' -68.6 NC_001847.1 + 4897 0.72 0.140001
Target:  5'- cCCCGCGCCGCugcgaacgacaCCGaCCGCGcCGGcgGCa -3'
miRNA:   3'- -GGGCGCGGCG-----------GGCgGGCGC-GCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 4948 0.74 0.112993
Target:  5'- cUCCGCGCCGCCCGUcucuucaggCCGgGCGcccGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGCG---------GGCgCGCca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 5636 0.77 0.061424
Target:  5'- uCCCGCGCgCGCCaaagaGCCCGUccaGCGGaUGCGc -3'
miRNA:   3'- -GGGCGCG-GCGGg----CGGGCG---CGCC-ACGC- -5'
6394 3' -68.6 NC_001847.1 + 5689 0.66 0.348813
Target:  5'- gCCgGgGCCGCCCaGaCCCG-GCaguucaGGUGCGc -3'
miRNA:   3'- -GGgCgCGGCGGG-C-GGGCgCG------CCACGC- -5'
6394 3' -68.6 NC_001847.1 + 5793 0.66 0.355986
Target:  5'- cCCCGgGCCcggcaCCgCGCuuGCGCuuggcgcgccgGGUGCGu -3'
miRNA:   3'- -GGGCgCGGc----GG-GCGggCGCG-----------CCACGC- -5'
6394 3' -68.6 NC_001847.1 + 5899 0.68 0.28895
Target:  5'- gCCGCGCCGUCgcagauugugCGCCCGggcccauuaGCGGUcgccGCGa -3'
miRNA:   3'- gGGCGCGGCGG----------GCGGGCg--------CGCCA----CGC- -5'
6394 3' -68.6 NC_001847.1 + 6101 0.68 0.27087
Target:  5'- -gCGCGagaCGCCCGCgagGCGCGGcGCGa -3'
miRNA:   3'- ggGCGCg--GCGGGCGgg-CGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 6128 0.68 0.28895
Target:  5'- cCCCGCuucCCGCCCaggacCCCG-GCGGUgaGCGa -3'
miRNA:   3'- -GGGCGc--GGCGGGc----GGGCgCGCCA--CGC- -5'
6394 3' -68.6 NC_001847.1 + 6340 0.72 0.157456
Target:  5'- gCCUGCGCgccCGCCCGCCCGCcCuGGUcugaccgcccGCGg -3'
miRNA:   3'- -GGGCGCG---GCGGGCGGGCGcG-CCA----------CGC- -5'
6394 3' -68.6 NC_001847.1 + 6357 0.66 0.363262
Target:  5'- aCCGCGCCGCgggCGUagCCGCuGCGGcagcagaagGCGg -3'
miRNA:   3'- gGGCGCGGCGg--GCG--GGCG-CGCCa--------CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.