miRNA display CGI


Results 61 - 80 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 6908 0.67 0.327918
Target:  5'- --aGCGCgCGCgCGCCCuGCGCgcuguugaaGGUGCa -3'
miRNA:   3'- gggCGCG-GCGgGCGGG-CGCG---------CCACGc -5'
6394 3' -68.6 NC_001847.1 + 6965 0.69 0.253156
Target:  5'- cCCUGcCGCCGCCCccugccauagcuuGCCgGCGUGG-GUa -3'
miRNA:   3'- -GGGC-GCGGCGGG-------------CGGgCGCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 7162 0.75 0.084514
Target:  5'- gUCGCGCuCGCUCGCCCGgGCGGUuCa -3'
miRNA:   3'- gGGCGCG-GCGGGCGGGCgCGCCAcGc -5'
6394 3' -68.6 NC_001847.1 + 7810 0.66 0.370641
Target:  5'- gCCGCggcaGCCGgCCGCCUcgGCGcCGGUcGCc -3'
miRNA:   3'- gGGCG----CGGCgGGCGGG--CGC-GCCA-CGc -5'
6394 3' -68.6 NC_001847.1 + 7937 0.73 0.13673
Target:  5'- uCCCGCGCgCGCCgCGCCggaguuCGCGCcaUGCGg -3'
miRNA:   3'- -GGGCGCG-GCGG-GCGG------GCGCGccACGC- -5'
6394 3' -68.6 NC_001847.1 + 8058 0.71 0.182654
Target:  5'- gCCGCGCgGCCCGCgcgcagaggggggcaCCGCcGCGGcgagaucgGCGa -3'
miRNA:   3'- gGGCGCGgCGGGCG---------------GGCG-CGCCa-------CGC- -5'
6394 3' -68.6 NC_001847.1 + 8997 0.73 0.121406
Target:  5'- gCCGCGCUGUuuGCCaucguGCGCGGccGCGa -3'
miRNA:   3'- gGGCGCGGCGggCGGg----CGCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 9561 0.7 0.21715
Target:  5'- gCUGCaGCCGUCCaGCCCGCcgcccGCGGccGCGa -3'
miRNA:   3'- gGGCG-CGGCGGG-CGGGCG-----CGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 9636 0.7 0.21715
Target:  5'- gCCGCGCCgGCCCGCCgcucgagcaGC-CGG-GCGu -3'
miRNA:   3'- gGGCGCGG-CGGGCGGg--------CGcGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 9697 0.71 0.176854
Target:  5'- aCCCGC-CCGUCCuccggccaGCCaCGCGCGGguccuccgGCGg -3'
miRNA:   3'- -GGGCGcGGCGGG--------CGG-GCGCGCCa-------CGC- -5'
6394 3' -68.6 NC_001847.1 + 9718 0.66 0.377369
Target:  5'- cCCUGCGCggccacuCGCuuGCCaCGCGacCGG-GCGg -3'
miRNA:   3'- -GGGCGCG-------GCGggCGG-GCGC--GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 9883 0.7 0.21715
Target:  5'- gCCGCcucuGCCGCUCGCCCgaccGCGUGGUcuCGg -3'
miRNA:   3'- gGGCG----CGGCGGGCGGG----CGCGCCAc-GC- -5'
6394 3' -68.6 NC_001847.1 + 10067 0.72 0.140001
Target:  5'- gCCGCGCgggcccagCGcCCCGCCgCGCGCGGgaGCa -3'
miRNA:   3'- gGGCGCG--------GC-GGGCGG-GCGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 10227 0.68 0.276793
Target:  5'- gCCCGCuGUCGCCC-CCgGCGCGccUGCc -3'
miRNA:   3'- -GGGCG-CGGCGGGcGGgCGCGCc-ACGc -5'
6394 3' -68.6 NC_001847.1 + 10283 0.73 0.124337
Target:  5'- aCCGCggGCCGCgCGCUCGCcagucagugcgGCGGUGCu -3'
miRNA:   3'- gGGCG--CGGCGgGCGGGCG-----------CGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 10385 0.71 0.18098
Target:  5'- cCCCgGUGCCGCCCGCgaGCcGCGGUc-- -3'
miRNA:   3'- -GGG-CGCGGCGGGCGggCG-CGCCAcgc -5'
6394 3' -68.6 NC_001847.1 + 10410 0.7 0.202911
Target:  5'- aCgGC-CCGUCC-CCCGCGCGGUucGCGc -3'
miRNA:   3'- gGgCGcGGCGGGcGGGCGCGCCA--CGC- -5'
6394 3' -68.6 NC_001847.1 + 10443 0.67 0.341744
Target:  5'- cCCCGCGCCcggcuccCCUGgCCGCGUugcuGGaGCGa -3'
miRNA:   3'- -GGGCGCGGc------GGGCgGGCGCG----CCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 10573 0.76 0.078543
Target:  5'- gCCCgGCGCCGgcggccccCCCGCgCGCGCGGgccgGCGc -3'
miRNA:   3'- -GGG-CGCGGC--------GGGCGgGCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 10668 0.68 0.273227
Target:  5'- aCCCGuCGCCgggggGCUCGCCCuccggucgcgcccggGCGCGGcccGCGc -3'
miRNA:   3'- -GGGC-GCGG-----CGGGCGGG---------------CGCGCCa--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.