miRNA display CGI


Results 81 - 100 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 10926 0.66 0.385702
Target:  5'- aCCGCGaggcgaGCCgGCUgGCGCGGcuggccuuUGCGc -3'
miRNA:   3'- gGGCGCgg----CGGgCGGgCGCGCC--------ACGC- -5'
6394 3' -68.6 NC_001847.1 + 11186 0.7 0.202911
Target:  5'- --gGCuGCCGCUgGUCCGCGCGGgGCu -3'
miRNA:   3'- gggCG-CGGCGGgCGGGCGCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 11451 0.67 0.301521
Target:  5'- cCCCGCGCCaGCggcuaCCGUgCGCGUGGcgaGCc -3'
miRNA:   3'- -GGGCGCGG-CG-----GGCGgGCGCGCCa--CGc -5'
6394 3' -68.6 NC_001847.1 + 11547 0.66 0.370641
Target:  5'- uUCGCGUCuggaGUgCGCCCaGCG-GGUGCGg -3'
miRNA:   3'- gGGCGCGG----CGgGCGGG-CGCgCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 11851 0.69 0.248194
Target:  5'- uCUgGCGCCGCCC-UgCGgGCGGcGCGa -3'
miRNA:   3'- -GGgCGCGGCGGGcGgGCgCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 12035 0.66 0.355986
Target:  5'- gCCCggcggaGCGCUGgaCGCCCuGCGCGcUGCGg -3'
miRNA:   3'- -GGG------CGCGGCggGCGGG-CGCGCcACGC- -5'
6394 3' -68.6 NC_001847.1 + 12328 0.69 0.237457
Target:  5'- -gCGCGcCCGCCgGCUCGCuggugaGCGGUGgGc -3'
miRNA:   3'- ggGCGC-GGCGGgCGGGCG------CGCCACgC- -5'
6394 3' -68.6 NC_001847.1 + 12686 0.66 0.393383
Target:  5'- gCUGCaCUGCgCGUCgGCGgGGUGCa -3'
miRNA:   3'- gGGCGcGGCGgGCGGgCGCgCCACGc -5'
6394 3' -68.6 NC_001847.1 + 12787 0.69 0.232236
Target:  5'- gCUGUGCCGCacgCCGCCCaacgaucagcGCGUGGcGCGc -3'
miRNA:   3'- gGGCGCGGCG---GGCGGG----------CGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 12917 0.7 0.21715
Target:  5'- gCCGUGCCGCCgcgggggcgCGCgugucgUCGUGCGGUGgGg -3'
miRNA:   3'- gGGCGCGGCGG---------GCG------GGCGCGCCACgC- -5'
6394 3' -68.6 NC_001847.1 + 13001 0.67 0.327918
Target:  5'- uCCCGCGCgGCgC-CCUGCGCGccgGCc -3'
miRNA:   3'- -GGGCGCGgCGgGcGGGCGCGCca-CGc -5'
6394 3' -68.6 NC_001847.1 + 13132 0.78 0.054276
Target:  5'- gCgGCGCCGCgCCGCCUGcCGCGGccgGCGg -3'
miRNA:   3'- gGgCGCGGCG-GGCGGGC-GCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 13650 0.7 0.193874
Target:  5'- gCUCGCGCUgGUUCuCCgGCGCGGUGUGg -3'
miRNA:   3'- -GGGCGCGG-CGGGcGGgCGCGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 13933 0.73 0.121406
Target:  5'- gCCGCGCCGCggcaggggggCCGcCCCGCGCaaGUGCc -3'
miRNA:   3'- gGGCGCGGCG----------GGC-GGGCGCGc-CACGc -5'
6394 3' -68.6 NC_001847.1 + 14047 0.66 0.370641
Target:  5'- gCCGCgaGCCGCUagGUUCGCGgcCGGUGCu -3'
miRNA:   3'- gGGCG--CGGCGGg-CGGGCGC--GCCACGc -5'
6394 3' -68.6 NC_001847.1 + 14219 0.68 0.295183
Target:  5'- gCCCGCG-CGCCCGCCC-CGCccucguaUGCc -3'
miRNA:   3'- -GGGCGCgGCGGGCGGGcGCGcc-----ACGc -5'
6394 3' -68.6 NC_001847.1 + 14314 0.66 0.392611
Target:  5'- cCCCGCucccGCUGCUCGCgguggggCCggGCGUGGUGgCGg -3'
miRNA:   3'- -GGGCG----CGGCGGGCG-------GG--CGCGCCAC-GC- -5'
6394 3' -68.6 NC_001847.1 + 14402 0.68 0.27087
Target:  5'- gCUgGCGUCGaggcCCCGCUCGCaGCGGgucGCGa -3'
miRNA:   3'- -GGgCGCGGC----GGGCGGGCG-CGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 14527 0.67 0.321162
Target:  5'- cUCgGCGgCGCUCGCugCC-CGCGGUGCc -3'
miRNA:   3'- -GGgCGCgGCGGGCG--GGcGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 14647 0.7 0.193874
Target:  5'- uCgCGCGCCGCUCGCUgcgaGCGgGGcGCGu -3'
miRNA:   3'- -GgGCGCGGCGGGCGGg---CGCgCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.