miRNA display CGI


Results 101 - 120 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 14702 0.66 0.363262
Target:  5'- --gGCGUCGUUCGCgaCGCGCGGgcaggagGCGa -3'
miRNA:   3'- gggCGCGGCGGGCGg-GCGCGCCa------CGC- -5'
6394 3' -68.6 NC_001847.1 + 14797 0.7 0.207565
Target:  5'- uCCCguuguaGCGCCGCCCGgCCGggaGCuGGUGUu -3'
miRNA:   3'- -GGG------CGCGGCGGGCgGGCg--CG-CCACGc -5'
6394 3' -68.6 NC_001847.1 + 14818 0.67 0.327918
Target:  5'- gCUGCGCggCGCCC-UgCGCGCGGUGg- -3'
miRNA:   3'- gGGCGCG--GCGGGcGgGCGCGCCACgc -5'
6394 3' -68.6 NC_001847.1 + 15024 0.67 0.301521
Target:  5'- gCCGCGCgaGCCgCGgCCGC-CGG-GCGa -3'
miRNA:   3'- gGGCGCGg-CGG-GCgGGCGcGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 15048 0.67 0.31451
Target:  5'- -aCGCGCgGgcgcuuuaucuCCCGcCCCGCGCGGcucgGCa -3'
miRNA:   3'- ggGCGCGgC-----------GGGC-GGGCGCGCCa---CGc -5'
6394 3' -68.6 NC_001847.1 + 15486 0.67 0.341744
Target:  5'- gCCGcCGuuGCCCuCCCGCcCGGcUGCc -3'
miRNA:   3'- gGGC-GCggCGGGcGGGCGcGCC-ACGc -5'
6394 3' -68.6 NC_001847.1 + 15578 0.68 0.27087
Target:  5'- gCCGcCGCUGCCCGCagagucuggCCGCGCGccccuUGCc -3'
miRNA:   3'- gGGC-GCGGCGGGCG---------GGCGCGCc----ACGc -5'
6394 3' -68.6 NC_001847.1 + 15773 0.67 0.341744
Target:  5'- gCCCGCuuucgccgGCgGCaaGCgCCGCGCGGcgggagGCGg -3'
miRNA:   3'- -GGGCG--------CGgCGggCG-GGCGCGCCa-----CGC- -5'
6394 3' -68.6 NC_001847.1 + 15921 0.69 0.232236
Target:  5'- gCCUGCcCCG-CCGCCC-CGCGGUGg- -3'
miRNA:   3'- -GGGCGcGGCgGGCGGGcGCGCCACgc -5'
6394 3' -68.6 NC_001847.1 + 15980 0.68 0.28282
Target:  5'- gCCUGCcCCGCCgC-CCCGCGgCGGccGCGg -3'
miRNA:   3'- -GGGCGcGGCGG-GcGGGCGC-GCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 16040 0.68 0.28282
Target:  5'- gCCUGCcCCGCCgC-CCCGCGgCGGccGCGg -3'
miRNA:   3'- -GGGCGcGGCGG-GcGGGCGC-GCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 16174 0.66 0.391068
Target:  5'- cCCCGUugGCCGCggaCCccgaaucggaacugGCCCGCGCcaUGCGg -3'
miRNA:   3'- -GGGCG--CGGCG---GG--------------CGGGCGCGccACGC- -5'
6394 3' -68.6 NC_001847.1 + 16371 0.66 0.348102
Target:  5'- gCCgGUGCCGCUCaCaCCGCGCGccacaaccgcgacGUGUGg -3'
miRNA:   3'- -GGgCGCGGCGGGcG-GGCGCGC-------------CACGC- -5'
6394 3' -68.6 NC_001847.1 + 16392 0.72 0.161175
Target:  5'- uUCGC-CCGCUCGCagcagCCGCGCGGgGCGa -3'
miRNA:   3'- gGGCGcGGCGGGCG-----GGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 16659 0.71 0.164973
Target:  5'- cCCCGCGCCuacagGCgCGCCCGgGCcuUGCGc -3'
miRNA:   3'- -GGGCGCGG-----CGgGCGGGCgCGccACGC- -5'
6394 3' -68.6 NC_001847.1 + 16677 0.67 0.301521
Target:  5'- gUCGCGCaGCCuUGgCUGCGCGG-GCGa -3'
miRNA:   3'- gGGCGCGgCGG-GCgGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 16898 0.77 0.06779
Target:  5'- gCUGCGUCGCCgGUCuCGCGCGG-GCGg -3'
miRNA:   3'- gGGCGCGGCGGgCGG-GCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 17312 0.67 0.31451
Target:  5'- gUCGgGCCgGUCCGCUCuuGUGGUGCa -3'
miRNA:   3'- gGGCgCGG-CGGGCGGGcgCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 17827 0.66 0.385702
Target:  5'- cCCCcCGCCGCUagguCGCCCauCGCGGcucGCGu -3'
miRNA:   3'- -GGGcGCGGCGG----GCGGGc-GCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 17872 0.74 0.115735
Target:  5'- gCCGgGUCGCCCGuCCuCGgGCGGgGCGg -3'
miRNA:   3'- gGGCgCGGCGGGC-GG-GCgCGCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.