miRNA display CGI


Results 1 - 20 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 135137 0.66 0.378121
Target:  5'- uCUC-CG-CGCCC-CCCGCGCGGggGCu -3'
miRNA:   3'- -GGGcGCgGCGGGcGGGCGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 135126 0.72 0.161175
Target:  5'- cCCCgGgGUCGCaggggGCCCGCGCGGcGCGg -3'
miRNA:   3'- -GGG-CgCGGCGgg---CGGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 135085 0.7 0.189055
Target:  5'- cCCCGCccCCGCCCGCcgcaaugcacgcgCCGCGCGGa--- -3'
miRNA:   3'- -GGGCGc-GGCGGGCG-------------GGCGCGCCacgc -5'
6394 3' -68.6 NC_001847.1 + 135004 0.66 0.378121
Target:  5'- cCCCG-GCCgggGCCCgagGCCCGCggGCGGggccgggGCGc -3'
miRNA:   3'- -GGGCgCGG---CGGG---CGGGCG--CGCCa------CGC- -5'
6394 3' -68.6 NC_001847.1 + 134842 0.66 0.363262
Target:  5'- uCCgGCGgggCGCggggacggCGCCCGCGCGGgcucgGCGg -3'
miRNA:   3'- -GGgCGCg--GCGg-------GCGGGCGCGCCa----CGC- -5'
6394 3' -68.6 NC_001847.1 + 134730 0.72 0.158934
Target:  5'- cCCCGC-CCGCCCcggGCCCucggucucggucggaGCGCGGUccgGCGc -3'
miRNA:   3'- -GGGCGcGGCGGG---CGGG---------------CGCGCCA---CGC- -5'
6394 3' -68.6 NC_001847.1 + 134268 0.69 0.232236
Target:  5'- cCCCgGCGCgGgCCGCcgCCGCGCguggaGGUGCu -3'
miRNA:   3'- -GGG-CGCGgCgGGCG--GGCGCG-----CCACGc -5'
6394 3' -68.6 NC_001847.1 + 134098 0.66 0.393383
Target:  5'- gCCCGCGggagaCGCUCGUgCUGCuGCGGcGCGc -3'
miRNA:   3'- -GGGCGCg----GCGGGCG-GGCG-CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 134046 0.72 0.157456
Target:  5'- gCgGCGCCGCCCGCggCCGCgGCGcccgGCGu -3'
miRNA:   3'- gGgCGCGGCGGGCG--GGCG-CGCca--CGC- -5'
6394 3' -68.6 NC_001847.1 + 133992 0.73 0.128551
Target:  5'- gCCGCGCUGCCggaGCCgCGCGCcgaggcgccgccgcuGGUGCu -3'
miRNA:   3'- gGGCGCGGCGGg--CGG-GCGCG---------------CCACGc -5'
6394 3' -68.6 NC_001847.1 + 133952 0.68 0.276793
Target:  5'- gCCCGacgaGCUGCCgGCCgCG-GCGGUGg- -3'
miRNA:   3'- -GGGCg---CGGCGGgCGG-GCgCGCCACgc -5'
6394 3' -68.6 NC_001847.1 + 133870 0.69 0.242776
Target:  5'- aCCGCGCCGCcaaCCGCUgggggcucggCGCGCcGcUGCGg -3'
miRNA:   3'- gGGCGCGGCG---GGCGG----------GCGCGcC-ACGC- -5'
6394 3' -68.6 NC_001847.1 + 133742 0.71 0.176854
Target:  5'- nCCCGUGCCGCCgCGCgaguaCCGgcaGCGcGUGCu -3'
miRNA:   3'- -GGGCGCGGCGG-GCG-----GGCg--CGC-CACGc -5'
6394 3' -68.6 NC_001847.1 + 133714 0.77 0.066141
Target:  5'- gCCaCGCGCCuggGCCCGCCaC-CGCGGUGCc -3'
miRNA:   3'- -GG-GCGCGG---CGGGCGG-GcGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 133627 0.67 0.333398
Target:  5'- gCgCGCGCCGaggCCGCCuaCGCGCGGcucuaccccgagGCGc -3'
miRNA:   3'- -GgGCGCGGCg--GGCGG--GCGCGCCa-----------CGC- -5'
6394 3' -68.6 NC_001847.1 + 133551 0.7 0.202911
Target:  5'- gCCGCG-CGCUgGCCCGaGCGGcGCGc -3'
miRNA:   3'- gGGCGCgGCGGgCGGGCgCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 133415 0.69 0.248194
Target:  5'- -gCGCGCgGCUgGCCgCgGCGCGGcgGCGg -3'
miRNA:   3'- ggGCGCGgCGGgCGG-G-CGCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 133285 0.68 0.28895
Target:  5'- gCCGCGCgGUgCGCuCCgGCGCaGaGUGCGu -3'
miRNA:   3'- gGGCGCGgCGgGCG-GG-CGCG-C-CACGC- -5'
6394 3' -68.6 NC_001847.1 + 133218 0.68 0.28282
Target:  5'- gCCCGagugGCCGCCgCGCCgCG-GCGG-GCu -3'
miRNA:   3'- -GGGCg---CGGCGG-GCGG-GCgCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 133165 0.72 0.161175
Target:  5'- uUCUGCGCUGCUa-CCUGCGCGG-GCGc -3'
miRNA:   3'- -GGGCGCGGCGGgcGGGCGCGCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.