miRNA display CGI


Results 21 - 40 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 133039 0.72 0.150249
Target:  5'- gCCGagauCGCgGCCCGCcgCCGCGCGGgccccGCGg -3'
miRNA:   3'- gGGC----GCGgCGGGCG--GGCGCGCCa----CGC- -5'
6394 3' -68.6 NC_001847.1 + 132961 0.75 0.097778
Target:  5'- gCCCGCacGCCGCCCaGgCgGCGCGG-GCGc -3'
miRNA:   3'- -GGGCG--CGGCGGG-CgGgCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 132928 0.66 0.355264
Target:  5'- gCCGCGgCGCuggcggccuacugCCGCCCcgaggucgcgGCGCGGcucGCGg -3'
miRNA:   3'- gGGCGCgGCG-------------GGCGGG----------CGCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 132887 0.71 0.179733
Target:  5'- gCCgCGUGCCGCCCggggacuaccacacGCCCGCGCccaGCGc -3'
miRNA:   3'- -GG-GCGCGGCGGG--------------CGGGCGCGccaCGC- -5'
6394 3' -68.6 NC_001847.1 + 132819 0.8 0.041282
Target:  5'- gCCGcCGCUGCCCGCCCGCGUGcUGgGg -3'
miRNA:   3'- gGGC-GCGGCGGGCGGGCGCGCcACgC- -5'
6394 3' -68.6 NC_001847.1 + 132781 0.66 0.385702
Target:  5'- gCCGcCGCCGCCgacgcggccggGCCgGCGCGGcGgGa -3'
miRNA:   3'- gGGC-GCGGCGGg----------CGGgCGCGCCaCgC- -5'
6394 3' -68.6 NC_001847.1 + 132683 0.68 0.270283
Target:  5'- -gCGcCGCCGCCCGCUCGaucgggagcucgcUGCGGcugGCGc -3'
miRNA:   3'- ggGC-GCGGCGGGCGGGC-------------GCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 132587 0.75 0.095208
Target:  5'- gCCCGCGCCgaagacaGCCCGCCgGagagcaGCGGUcccGCGg -3'
miRNA:   3'- -GGGCGCGG-------CGGGCGGgCg-----CGCCA---CGC- -5'
6394 3' -68.6 NC_001847.1 + 132395 0.68 0.28895
Target:  5'- gCCgGCGCCGCCgCGCCgGgcCGgGGgccgGUGg -3'
miRNA:   3'- -GGgCGCGGCGG-GCGGgC--GCgCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 132353 0.69 0.237457
Target:  5'- gCCGCGCuCGCggcccuggaggCCGCCgGCGgGG-GCGc -3'
miRNA:   3'- gGGCGCG-GCG-----------GGCGGgCGCgCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 132307 0.71 0.168851
Target:  5'- gCgCGCGCUguucaGCCCGCCgGCGgaGGUGCc -3'
miRNA:   3'- -GgGCGCGG-----CGGGCGGgCGCg-CCACGc -5'
6394 3' -68.6 NC_001847.1 + 132278 0.67 0.327918
Target:  5'- gCCCGaCGacgaCGCCCGCgagUCGCaGCGGcaugGCGg -3'
miRNA:   3'- -GGGC-GCg---GCGGGCG---GGCG-CGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 132239 0.73 0.127334
Target:  5'- aCCGUGgC-CCCGCUCGCGCGGUacucgacgcGCGg -3'
miRNA:   3'- gGGCGCgGcGGGCGGGCGCGCCA---------CGC- -5'
6394 3' -68.6 NC_001847.1 + 132110 0.7 0.21715
Target:  5'- cUCCGgGCCGCCgagcUGCUCgGCGCGGcccGCGa -3'
miRNA:   3'- -GGGCgCGGCGG----GCGGG-CGCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 132038 0.67 0.327918
Target:  5'- gCCGCggcgggccGCgGCCUGCCgGcCGCGGccUGCGc -3'
miRNA:   3'- gGGCG--------CGgCGGGCGGgC-GCGCC--ACGC- -5'
6394 3' -68.6 NC_001847.1 + 132000 0.77 0.069478
Target:  5'- gCCGCGCCGCCgGCgCCGCcgggcuccCGGUGCu -3'
miRNA:   3'- gGGCGCGGCGGgCG-GGCGc-------GCCACGc -5'
6394 3' -68.6 NC_001847.1 + 131961 0.66 0.363262
Target:  5'- gCUGCGCCG-UCGCCUGCcGCGaG-GCGc -3'
miRNA:   3'- gGGCGCGGCgGGCGGGCG-CGC-CaCGC- -5'
6394 3' -68.6 NC_001847.1 + 131899 0.68 0.265049
Target:  5'- gCCCcUGCCGCCgGCgagcaCgGCGCGG-GCGg -3'
miRNA:   3'- -GGGcGCGGCGGgCG-----GgCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 131843 0.75 0.097778
Target:  5'- gCCCGCGCCGCgCuCGCCgagcugCGCGCcGUGCu -3'
miRNA:   3'- -GGGCGCGGCG-G-GCGG------GCGCGcCACGc -5'
6394 3' -68.6 NC_001847.1 + 131738 0.67 0.334088
Target:  5'- cCCCGgGCUGCUCuCCCGCugcuuGCGGagggcuuUGCGc -3'
miRNA:   3'- -GGGCgCGGCGGGcGGGCG-----CGCC-------ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.