miRNA display CGI


Results 41 - 60 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 131342 0.76 0.078543
Target:  5'- gCCGcCGCCGCCCGgCCGCgugcgcuucgGCGGcGCGg -3'
miRNA:   3'- gGGC-GCGGCGGGCgGGCG----------CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 131291 0.66 0.385702
Target:  5'- cCCCgGCGCCGUCuaCGUCUgGgGCGGcGCGa -3'
miRNA:   3'- -GGG-CGCGGCGG--GCGGG-CgCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 131247 0.66 0.370641
Target:  5'- gCCCGCGCuggcuaCGCCgcggCGCCgCGCGaCGG-GCc -3'
miRNA:   3'- -GGGCGCG------GCGG----GCGG-GCGC-GCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 131210 0.7 0.198347
Target:  5'- cCCCcCGCCGCggCGCCaGCGCGG-GCGc -3'
miRNA:   3'- -GGGcGCGGCGg-GCGGgCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 131208 0.71 0.164973
Target:  5'- gUCGCgcucGCCGCCCGCUgccaGCGCuGUGCGu -3'
miRNA:   3'- gGGCG----CGGCGGGCGGg---CGCGcCACGC- -5'
6394 3' -68.6 NC_001847.1 + 131155 0.7 0.21715
Target:  5'- cCCCGCgggGCCGCgCGCCCGgGCccccgGCGc -3'
miRNA:   3'- -GGGCG---CGGCGgGCGGGCgCGcca--CGC- -5'
6394 3' -68.6 NC_001847.1 + 130972 0.66 0.370641
Target:  5'- -gCGCGCgGCCCaaaacaagGCCCGCucGCuGGUGUc -3'
miRNA:   3'- ggGCGCGgCGGG--------CGGGCG--CG-CCACGc -5'
6394 3' -68.6 NC_001847.1 + 130918 0.71 0.185191
Target:  5'- gCCgGCGCgCGCCgGCaCCGCGCaGG-GCu -3'
miRNA:   3'- -GGgCGCG-GCGGgCG-GGCGCG-CCaCGc -5'
6394 3' -68.6 NC_001847.1 + 130764 0.69 0.232236
Target:  5'- gCCGCGgCGCgCGCgCuCGCGGUcGCGg -3'
miRNA:   3'- gGGCGCgGCGgGCGgGcGCGCCA-CGC- -5'
6394 3' -68.6 NC_001847.1 + 130602 0.67 0.307963
Target:  5'- gCCGCGCCaCCCGCgggcggCCGCcGCGaggcacgucGUGCGc -3'
miRNA:   3'- gGGCGCGGcGGGCG------GGCG-CGC---------CACGC- -5'
6394 3' -68.6 NC_001847.1 + 130224 0.69 0.242776
Target:  5'- --gGCGCUGUugCCGCCgGCGCGGU-CGg -3'
miRNA:   3'- gggCGCGGCG--GGCGGgCGCGCCAcGC- -5'
6394 3' -68.6 NC_001847.1 + 130181 0.69 0.247648
Target:  5'- cCCCGCgGgCGCCCgGCCUgaagagacgggcgGCGCGGaggGCGc -3'
miRNA:   3'- -GGGCG-CgGCGGG-CGGG-------------CGCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 130137 0.69 0.222083
Target:  5'- cUCCGCGCCGCcgCCGCCgCGCuuugccGCGGccGCc -3'
miRNA:   3'- -GGGCGCGGCG--GGCGG-GCG------CGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 130084 0.66 0.393383
Target:  5'- uCCCGgccCGCCGUCCGuCCCGU-CGGaGCc -3'
miRNA:   3'- -GGGC---GCGGCGGGC-GGGCGcGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 130083 0.66 0.370641
Target:  5'- uCCUGgGCCgcGCCCGaCCgCGaCGCGG-GCu -3'
miRNA:   3'- -GGGCgCGG--CGGGC-GG-GC-GCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 129970 0.69 0.242776
Target:  5'- uCCCGCGCCGCgguaaaaCaaaaaaaagGCaCGCGCGGUGgGg -3'
miRNA:   3'- -GGGCGCGGCGg------G---------CGgGCGCGCCACgC- -5'
6394 3' -68.6 NC_001847.1 + 129920 0.68 0.295183
Target:  5'- gCCGCGCgCGcCCCGCCgGC-CGccGCGg -3'
miRNA:   3'- gGGCGCG-GC-GGGCGGgCGcGCcaCGC- -5'
6394 3' -68.6 NC_001847.1 + 129778 0.66 0.355986
Target:  5'- aCCGCcggaGCCuggGCCCGgCCGCGCcGcGCGa -3'
miRNA:   3'- gGGCG----CGG---CGGGCgGGCGCGcCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 129592 0.72 0.157456
Target:  5'- gCCGCuGCCGCugcugCCGCcgCCGC-CGGUGCGa -3'
miRNA:   3'- gGGCG-CGGCG-----GGCG--GGCGcGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 129532 0.67 0.327237
Target:  5'- aCCGCGgCGCCCacGCCCGUcuaccgaGUGGaGCu -3'
miRNA:   3'- gGGCGCgGCGGG--CGGGCG-------CGCCaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.