miRNA display CGI


Results 61 - 80 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 129419 0.72 0.161175
Target:  5'- cCCCugauGCGaCGCCCGCCUGCuGCGGgGUGu -3'
miRNA:   3'- -GGG----CGCgGCGGGCGGGCG-CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 129382 0.69 0.222083
Target:  5'- gCCGCGCUucgcguugGCgCGCCgGacgGCGGUGCGu -3'
miRNA:   3'- gGGCGCGG--------CGgGCGGgCg--CGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 129336 0.71 0.18098
Target:  5'- aCCCG-GCgCGCCaagCGCaaGCGCGGUGCc -3'
miRNA:   3'- -GGGCgCG-GCGG---GCGggCGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 129217 0.68 0.265049
Target:  5'- gCCCGUcguccGCCGCCCaUCCGCcuaGCGGcUGCc -3'
miRNA:   3'- -GGGCG-----CGGCGGGcGGGCG---CGCC-ACGc -5'
6394 3' -68.6 NC_001847.1 + 129036 0.66 0.370641
Target:  5'- gCUCGCGCCGC--GCCU-CGCGG-GCGu -3'
miRNA:   3'- -GGGCGCGGCGggCGGGcGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 128783 0.67 0.301521
Target:  5'- gCCGCaGCgGCUaCGCCCGCggcGCGGuUGCc -3'
miRNA:   3'- gGGCG-CGgCGG-GCGGGCG---CGCC-ACGc -5'
6394 3' -68.6 NC_001847.1 + 128603 0.66 0.355986
Target:  5'- gUCGCGCC-CUCGCaCCG-GCGGcUGUGg -3'
miRNA:   3'- gGGCGCGGcGGGCG-GGCgCGCC-ACGC- -5'
6394 3' -68.6 NC_001847.1 + 128519 0.66 0.366202
Target:  5'- aCgGuCGCCGCCUaCCgGCggcuuuacuccaacaGCGGUGCGa -3'
miRNA:   3'- gGgC-GCGGCGGGcGGgCG---------------CGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 128202 0.7 0.193874
Target:  5'- cCCCGCGCCugGCCCGUCUuCGU-GUGCa -3'
miRNA:   3'- -GGGCGCGG--CGGGCGGGcGCGcCACGc -5'
6394 3' -68.6 NC_001847.1 + 128167 0.66 0.385702
Target:  5'- gCUGgGCgGCCCGCCgG-GCGGaaGCGc -3'
miRNA:   3'- gGGCgCGgCGGGCGGgCgCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 128074 0.71 0.168851
Target:  5'- gCCCGgGCgGCUCGCCgCGUGCcuuGGUGgCGa -3'
miRNA:   3'- -GGGCgCGgCGGGCGG-GCGCG---CCAC-GC- -5'
6394 3' -68.6 NC_001847.1 + 127405 0.71 0.176854
Target:  5'- cCCUGgcCGCCGCCuccgCGCCCGCGCccUGCGc -3'
miRNA:   3'- -GGGC--GCGGCGG----GCGGGCGCGccACGC- -5'
6394 3' -68.6 NC_001847.1 + 127245 0.7 0.193874
Target:  5'- gCgGcCGCCGCgCGcCCCGCGCGGcuagGUGg -3'
miRNA:   3'- gGgC-GCGGCGgGC-GGGCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 127113 0.68 0.295183
Target:  5'- uCUCGauuauCCGCCauuggauuuuuUGCCCGCGCGGggGCGa -3'
miRNA:   3'- -GGGCgc---GGCGG-----------GCGGGCGCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 127054 0.73 0.124337
Target:  5'- gCCGCGUCGCCgaucuCGCCgCG-GCGGUGCc -3'
miRNA:   3'- gGGCGCGGCGG-----GCGG-GCgCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 127008 0.66 0.370641
Target:  5'- cCUCGCGCagcacCGCCCGCCCcuggggccccGCGCc-UGCGc -3'
miRNA:   3'- -GGGCGCG-----GCGGGCGGG----------CGCGccACGC- -5'
6394 3' -68.6 NC_001847.1 + 127006 0.77 0.066141
Target:  5'- cCCCGCGaggcucgucggcCCGCCCGCCC-CGCGGuUGUa -3'
miRNA:   3'- -GGGCGC------------GGCGGGCGGGcGCGCC-ACGc -5'
6394 3' -68.6 NC_001847.1 + 126675 0.66 0.370641
Target:  5'- gCCgaGCGCCGCCCccgGCCCG-GCGccGCc -3'
miRNA:   3'- -GGg-CGCGGCGGG---CGGGCgCGCcaCGc -5'
6394 3' -68.6 NC_001847.1 + 126543 0.66 0.348102
Target:  5'- gCuuGCGCUGCggcugaCGCUCGCGCGGcuaaccaccacgcUGCc -3'
miRNA:   3'- -GggCGCGGCGg-----GCGGGCGCGCC-------------ACGc -5'
6394 3' -68.6 NC_001847.1 + 125630 0.73 0.119678
Target:  5'- -gCGCGCCGCCCGCUcggcucggguccgcuCGuCGCGGcGCGc -3'
miRNA:   3'- ggGCGCGGCGGGCGG---------------GC-GCGCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.