miRNA display CGI


Results 81 - 100 of 1045 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 125501 0.69 0.242776
Target:  5'- gCCCG-GCUGCUCgagcggcggGCCgGCGCGGcgGCGg -3'
miRNA:   3'- -GGGCgCGGCGGG---------CGGgCGCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 125421 0.72 0.150249
Target:  5'- cCCCgGCGCCGCCgGaggaCCCGCGCGuG-GCu -3'
miRNA:   3'- -GGG-CGCGGCGGgC----GGGCGCGC-CaCGc -5'
6394 3' -68.6 NC_001847.1 + 125400 0.69 0.253156
Target:  5'- cCCCGgGgcagggcCCGCCCGgUCGCGUGGcaaGCGa -3'
miRNA:   3'- -GGGCgC-------GGCGGGCgGGCGCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 125209 0.73 0.13353
Target:  5'- gCCCGgGCCGCggcgagcgugcUCGUCCGCGgGG-GCGg -3'
miRNA:   3'- -GGGCgCGGCG-----------GGCGGGCGCgCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 125051 0.7 0.207565
Target:  5'- uCCC-CGCCGCuuGugcuCCCGCGCGcG-GCGg -3'
miRNA:   3'- -GGGcGCGGCGggC----GGGCGCGC-CaCGC- -5'
6394 3' -68.6 NC_001847.1 + 125010 0.7 0.198347
Target:  5'- gCUCGCGCUacggccggGCCCGCUCGCcGCGaagGCGg -3'
miRNA:   3'- -GGGCGCGG--------CGGGCGGGCG-CGCca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 124977 0.67 0.341744
Target:  5'- gCCgGCGCagcggGCCgGCCUGCuCGG-GCGa -3'
miRNA:   3'- -GGgCGCGg----CGGgCGGGCGcGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 124935 0.66 0.370641
Target:  5'- -gCGgGCgCGCCCuggGCCCG-GCGGcgGCGg -3'
miRNA:   3'- ggGCgCG-GCGGG---CGGGCgCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 124552 0.79 0.043394
Target:  5'- gCCgGCGCCgGCCCGCgCGCGCGGggggGCc -3'
miRNA:   3'- -GGgCGCGG-CGGGCGgGCGCGCCa---CGc -5'
6394 3' -68.6 NC_001847.1 + 124545 0.67 0.341744
Target:  5'- aCCGCGUcugCGUCUGCCgagagcaGCGCGGcgucUGCGu -3'
miRNA:   3'- gGGCGCG---GCGGGCGGg------CGCGCC----ACGC- -5'
6394 3' -68.6 NC_001847.1 + 124367 0.67 0.307963
Target:  5'- gCCCGCGuaCCGCUCuuCCCGCGCGc-GCa -3'
miRNA:   3'- -GGGCGC--GGCGGGc-GGGCGCGCcaCGc -5'
6394 3' -68.6 NC_001847.1 + 124307 0.75 0.090917
Target:  5'- gCCaCGCGCCG-CCGUCgCGCGCaGGUGCu -3'
miRNA:   3'- -GG-GCGCGGCgGGCGG-GCGCG-CCACGc -5'
6394 3' -68.6 NC_001847.1 + 124246 0.7 0.198347
Target:  5'- aCCGCGCCGCCaccaGCugCCGCagGCGGUcuGCc -3'
miRNA:   3'- gGGCGCGGCGGg---CG--GGCG--CGCCA--CGc -5'
6394 3' -68.6 NC_001847.1 + 124216 0.72 0.161175
Target:  5'- gCCGCGCCaGCCgGCUCGCcucGCGGUaGUa -3'
miRNA:   3'- gGGCGCGG-CGGgCGGGCG---CGCCA-CGc -5'
6394 3' -68.6 NC_001847.1 + 123813 0.75 0.084514
Target:  5'- uCCCGCuccggcgccaGCCGCCCGCCgGCcucgGCGG-GCGc -3'
miRNA:   3'- -GGGCG----------CGGCGGGCGGgCG----CGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 123783 0.73 0.13673
Target:  5'- aUCGCGCCGCgCGgCCGCGCGuacgaGUGCn -3'
miRNA:   3'- gGGCGCGGCGgGCgGGCGCGC-----CACGc -5'
6394 3' -68.6 NC_001847.1 + 123310 0.66 0.385702
Target:  5'- cUCCGCuaGgCGCCCcccccCCCGCGCGcuGUGCc -3'
miRNA:   3'- -GGGCG--CgGCGGGc----GGGCGCGC--CACGc -5'
6394 3' -68.6 NC_001847.1 + 123289 0.75 0.090917
Target:  5'- gCUCGCGCCGCCCGCa-GgGCGGcGCc -3'
miRNA:   3'- -GGGCGCGGCGGGCGggCgCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 122830 0.67 0.307963
Target:  5'- -gCGgGCgCGCCCaccggGCCCGCGCccuggcuuguGGUGCu -3'
miRNA:   3'- ggGCgCG-GCGGG-----CGGGCGCG----------CCACGc -5'
6394 3' -68.6 NC_001847.1 + 122715 0.68 0.276196
Target:  5'- nCCgGCGCCuuggaGCCCGCacucaaaUCGCGCGGgggaacugcUGCGc -3'
miRNA:   3'- -GGgCGCGG-----CGGGCG-------GGCGCGCC---------ACGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.