miRNA display CGI


Results 1 - 20 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 90855 0.83 0.022605
Target:  5'- gCCGCGCCGCgCCGCgCCGC-CGGUGUGg -3'
miRNA:   3'- gGGCGCGGCG-GGCG-GGCGcGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 106600 0.77 0.061424
Target:  5'- gCCCGCGCCGCCgaagcgcacgCGgCCGgGCGGcgGCGg -3'
miRNA:   3'- -GGGCGCGGCGG----------GCgGGCgCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 29522 0.77 0.066141
Target:  5'- gCCGCagaGCUCGCCCGCGCGGcGCGg -3'
miRNA:   3'- gGGCGcggCGGGCGGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 130084 0.66 0.393383
Target:  5'- uCCCGgccCGCCGUCCGuCCCGU-CGGaGCc -3'
miRNA:   3'- -GGGC---GCGGCGGGC-GGGCGcGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 39445 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 39472 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 105166 0.81 0.034653
Target:  5'- gCCGCGCCgGCCCGgCCGCGuCGGcgGCGg -3'
miRNA:   3'- gGGCGCGG-CGGGCgGGCGC-GCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 132819 0.8 0.041282
Target:  5'- gCCGcCGCUGCCCGCCCGCGUGcUGgGg -3'
miRNA:   3'- gGGC-GCGGCGGGCGGGCGCGCcACgC- -5'
6394 3' -68.6 NC_001847.1 + 64453 0.79 0.047939
Target:  5'- cCCCGcCGCCGCCCGCggCgGCGCGGgggGCc -3'
miRNA:   3'- -GGGC-GCGGCGGGCG--GgCGCGCCa--CGc -5'
6394 3' -68.6 NC_001847.1 + 5636 0.77 0.061424
Target:  5'- uCCCGCGCgCGCCaaagaGCCCGUccaGCGGaUGCGc -3'
miRNA:   3'- -GGGCGCG-GCGGg----CGGGCG---CGCC-ACGC- -5'
6394 3' -68.6 NC_001847.1 + 13132 0.78 0.054276
Target:  5'- gCgGCGCCGCgCCGCCUGcCGCGGccgGCGg -3'
miRNA:   3'- gGgCGCGGCG-GGCGGGC-GCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 124552 0.79 0.043394
Target:  5'- gCCgGCGCCgGCCCGCgCGCGCGGggggGCc -3'
miRNA:   3'- -GGgCGCGG-CGGGCGgGCGCGCCa---CGc -5'
6394 3' -68.6 NC_001847.1 + 39364 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 59120 0.78 0.054276
Target:  5'- gCCGcCGCCGCuCCGgCCGCGCGG-GUGg -3'
miRNA:   3'- gGGC-GCGGCG-GGCgGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 39391 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 103089 0.8 0.042325
Target:  5'- gCCCGgggGCCGCCgaGCCCGCGCGG-GCGc -3'
miRNA:   3'- -GGGCg--CGGCGGg-CGGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 56845 0.78 0.058462
Target:  5'- gCCGCGCCGCgCCGUCUGCGCccgGCGg -3'
miRNA:   3'- gGGCGCGGCG-GGCGGGCGCGccaCGC- -5'
6394 3' -68.6 NC_001847.1 + 67384 0.77 0.062804
Target:  5'- gUCCGCGCUGCCCGUCUccacaaugcgccgGCGCGuGUGCc -3'
miRNA:   3'- -GGGCGCGGCGGGCGGG-------------CGCGC-CACGc -5'
6394 3' -68.6 NC_001847.1 + 39418 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 39499 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.