miRNA display CGI


Results 41 - 60 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 113386 0.76 0.078543
Target:  5'- gCCCgGCGCCGgcggccccCCCGCgCGCGCGGgccgGCGc -3'
miRNA:   3'- -GGG-CGCGGC--------GGGCGgGCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 106600 0.77 0.061424
Target:  5'- gCCCGCGCCGCCgaagcgcacgCGgCCGgGCGGcgGCGg -3'
miRNA:   3'- -GGGCGCGGCGG----------GCgGGCgCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 39391 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 2179 0.76 0.078543
Target:  5'- gCCCGCGCCGCCUggGCggCGUGCGG-GCGc -3'
miRNA:   3'- -GGGCGCGGCGGG--CGg-GCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 39364 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 4536 0.74 0.102622
Target:  5'- cCUCGCGgCGgCCGCCCGCG-GGUGgCGc -3'
miRNA:   3'- -GGGCGCgGCgGGCGGGCGCgCCAC-GC- -5'
6394 3' -68.6 NC_001847.1 + 39445 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 74399 0.75 0.097778
Target:  5'- aCCgCGCgGCCGCCgCGCgCGCGCGG-GCc -3'
miRNA:   3'- -GG-GCG-CGGCGG-GCGgGCGCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 68463 0.75 0.095439
Target:  5'- gCCCGCgGCCGgggcCCCG-CCGCGCGG-GCGc -3'
miRNA:   3'- -GGGCG-CGGC----GGGCgGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 38311 0.75 0.088733
Target:  5'- aCCGUGuaGCCaaCGCCCGCGCGGUcGCc -3'
miRNA:   3'- gGGCGCggCGG--GCGGGCGCGCCA-CGc -5'
6394 3' -68.6 NC_001847.1 + 59643 0.75 0.086389
Target:  5'- aCCGCGCUcuuuugaGCCCGCUCGCGCccgcccGUGCGc -3'
miRNA:   3'- gGGCGCGG-------CGGGCGGGCGCGc-----CACGC- -5'
6394 3' -68.6 NC_001847.1 + 61387 0.76 0.083287
Target:  5'- gCCCGCGCCGCCgCccggcgcuuggaacuGCCCuCGCGGgagGCGc -3'
miRNA:   3'- -GGGCGCGGCGG-G---------------CGGGcGCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 32917 0.76 0.080487
Target:  5'- gCCUGgaCGCCGuCCCGCCgacgacccgCGCGCGGUGCc -3'
miRNA:   3'- -GGGC--GCGGC-GGGCGG---------GCGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 59741 0.76 0.074789
Target:  5'- gCCCGCGauGCCCGCCU-CGCGGcgGCGa -3'
miRNA:   3'- -GGGCGCggCGGGCGGGcGCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 66218 0.76 0.072976
Target:  5'- gCCCGCgGCCGCCgCGCCgaaccucaGCGCGGcgGCGc -3'
miRNA:   3'- -GGGCG-CGGCGG-GCGGg-------CGCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 42179 0.77 0.069478
Target:  5'- gCCGC-CCGCCCGCCCGaGCcGuGUGCGa -3'
miRNA:   3'- gGGCGcGGCGGGCGGGCgCG-C-CACGC- -5'
6394 3' -68.6 NC_001847.1 + 29522 0.77 0.066141
Target:  5'- gCCGCagaGCUCGCCCGCGCGGcGCGg -3'
miRNA:   3'- gGGCGcggCGGGCGGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 59120 0.78 0.054276
Target:  5'- gCCGcCGCCGCuCCGgCCGCGCGG-GUGg -3'
miRNA:   3'- gGGC-GCGGCG-GGCgGGCGCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 64453 0.79 0.047939
Target:  5'- cCCCGcCGCCGCCCGCggCgGCGCGGgggGCc -3'
miRNA:   3'- -GGGC-GCGGCGGGCG--GgCGCGCCa--CGc -5'
6394 3' -68.6 NC_001847.1 + 105166 0.81 0.034653
Target:  5'- gCCGCGCCgGCCCGgCCGCGuCGGcgGCGg -3'
miRNA:   3'- gGGCGCGG-CGGGCgGGCGC-GCCa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.