miRNA display CGI


Results 61 - 80 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 32917 0.76 0.080487
Target:  5'- gCCUGgaCGCCGuCCCGCCgacgacccgCGCGCGGUGCc -3'
miRNA:   3'- -GGGC--GCGGC-GGGCGG---------GCGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 33000 0.75 0.084514
Target:  5'- gCCGCGCCGCCgUGgUCGCGCGGagUGCc -3'
miRNA:   3'- gGGCGCGGCGG-GCgGGCGCGCC--ACGc -5'
6394 3' -68.6 NC_001847.1 + 39472 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 132819 0.8 0.041282
Target:  5'- gCCGcCGCUGCCCGCCCGCGUGcUGgGg -3'
miRNA:   3'- gGGC-GCGGCGGGCGGGCGCGCcACgC- -5'
6394 3' -68.6 NC_001847.1 + 46581 0.79 0.050382
Target:  5'- gUCCGCGCCGggcgucagcCCCGCCgGCGCGGccucGCGg -3'
miRNA:   3'- -GGGCGCGGC---------GGGCGGgCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 56845 0.78 0.058462
Target:  5'- gCCGCGCCGCgCCGUCUGCGCccgGCGg -3'
miRNA:   3'- gGGCGCGGCG-GGCGGGCGCGccaCGC- -5'
6394 3' -68.6 NC_001847.1 + 133714 0.77 0.066141
Target:  5'- gCCaCGCGCCuggGCCCGCCaC-CGCGGUGCc -3'
miRNA:   3'- -GG-GCGCGG---CGGGCGG-GcGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 132000 0.77 0.069478
Target:  5'- gCCGCGCCGCCgGCgCCGCcgggcuccCGGUGCu -3'
miRNA:   3'- gGGCGCGGCGGgCG-GGCGc-------GCCACGc -5'
6394 3' -68.6 NC_001847.1 + 73836 0.76 0.072976
Target:  5'- cCCCGCGCa-CCCGCgcaaaaaacgCCGcCGCGGUGCGc -3'
miRNA:   3'- -GGGCGCGgcGGGCG----------GGC-GCGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 4202 0.76 0.076644
Target:  5'- gCCgCGCGCaggcaGCCaaaGCCCuGCGCGGUGCc -3'
miRNA:   3'- -GG-GCGCGg----CGGg--CGGG-CGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 120428 0.73 0.127334
Target:  5'- aCCGCGuUCGCCUccuGCCCGCGCGucGCGa -3'
miRNA:   3'- gGGCGC-GGCGGG---CGGGCGCGCcaCGC- -5'
6394 3' -68.6 NC_001847.1 + 64904 0.73 0.121696
Target:  5'- gCC-CGCCGCCCGcCCCGCGCGucacaccaacgccgGCGg -3'
miRNA:   3'- gGGcGCGGCGGGC-GGGCGCGCca------------CGC- -5'
6394 3' -68.6 NC_001847.1 + 69687 0.75 0.088733
Target:  5'- cUCCGCGCgCGCCCGCCuacaCGgGCGG-GCu -3'
miRNA:   3'- -GGGCGCG-GCGGGCGG----GCgCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 32142 0.75 0.090917
Target:  5'- --gGCGCCGCCgCGCCCGCGCacgccgcgacgGcGUGCGc -3'
miRNA:   3'- gggCGCGGCGG-GCGGGCGCG-----------C-CACGC- -5'
6394 3' -68.6 NC_001847.1 + 74399 0.75 0.097778
Target:  5'- aCCgCGCgGCCGCCgCGCgCGCGCGG-GCc -3'
miRNA:   3'- -GG-GCG-CGGCGG-GCGgGCGCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 4536 0.74 0.102622
Target:  5'- cCUCGCGgCGgCCGCCCGCG-GGUGgCGc -3'
miRNA:   3'- -GGGCGCgGCgGGCGGGCGCgCCAC-GC- -5'
6394 3' -68.6 NC_001847.1 + 105741 0.74 0.10769
Target:  5'- gUCCGCGCCGCcagcgcggCCGCCUccaGCGCGGcgGCc -3'
miRNA:   3'- -GGGCGCGGCG--------GGCGGG---CGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 90761 0.74 0.112993
Target:  5'- aCCGCGUCGCggaaCGCCUGCGCGGcgagggGCc -3'
miRNA:   3'- gGGCGCGGCGg---GCGGGCGCGCCa-----CGc -5'
6394 3' -68.6 NC_001847.1 + 96877 0.74 0.115735
Target:  5'- gUCCGCGCuggggagggacCGCCgUGCUCGCGCGGgacugGCGg -3'
miRNA:   3'- -GGGCGCG-----------GCGG-GCGGGCGCGCCa----CGC- -5'
6394 3' -68.6 NC_001847.1 + 8997 0.73 0.121406
Target:  5'- gCCGCGCUGUuuGCCaucguGCGCGGccGCGa -3'
miRNA:   3'- gGGCGCGGCGggCGGg----CGCGCCa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.